miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 3' -67.9 NC_001806.1 + 152013 0.67 0.335324
Target:  5'- cGCGGCcccGCCccccaCGCCCGCCGCgcgcgcgcacgCCGc -3'
miRNA:   3'- aCGCCGac-CGGc----GCGGGCGGCGa----------GGC- -5'
5610 3' -67.9 NC_001806.1 + 151781 0.72 0.16765
Target:  5'- gGCGuCUGGCCGCuccuCCCcCCGCUCCu -3'
miRNA:   3'- aCGCcGACCGGCGc---GGGcGGCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 151523 0.68 0.282693
Target:  5'- gUGCGGUUGGgaCgGCGCCCGUgGgC-CCGg -3'
miRNA:   3'- -ACGCCGACC--GgCGCGGGCGgC-GaGGC- -5'
5610 3' -67.9 NC_001806.1 + 151453 0.68 0.276594
Target:  5'- gGCGGCggggcGGCCGCGggcgcgcuCCUGaCCGCggguUCCGa -3'
miRNA:   3'- aCGCCGa----CCGGCGC--------GGGC-GGCG----AGGC- -5'
5610 3' -67.9 NC_001806.1 + 151302 0.72 0.145445
Target:  5'- gGCGGCggugGGCCGgGCCucuggCGCCgGCUCgGg -3'
miRNA:   3'- aCGCCGa---CCGGCgCGG-----GCGG-CGAGgC- -5'
5610 3' -67.9 NC_001806.1 + 151116 0.66 0.402659
Target:  5'- cGCGGggGGCUccgGCGCCCccuccCCGC-CCGc -3'
miRNA:   3'- aCGCCgaCCGG---CGCGGGc----GGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 150659 0.77 0.069896
Target:  5'- cGCuGGUUGGCCGgGcCCCGCCGCgCUGg -3'
miRNA:   3'- aCG-CCGACCGGCgC-GGGCGGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 148000 0.67 0.32837
Target:  5'- cGCGGCgccgcGGCuCGCGacuggcgggagCCGCCGCcgCCGc -3'
miRNA:   3'- aCGCCGa----CCG-GCGCg----------GGCGGCGa-GGC- -5'
5610 3' -67.9 NC_001806.1 + 147519 0.67 0.321523
Target:  5'- cGCGGgaGGgcCCGUGCCCaCC-CUCCa -3'
miRNA:   3'- aCGCCgaCC--GGCGCGGGcGGcGAGGc -5'
5610 3' -67.9 NC_001806.1 + 144834 0.69 0.264713
Target:  5'- cGCGGCgguccgGGCCcCGUCCGgacCCGCUcgCCGg -3'
miRNA:   3'- aCGCCGa-----CCGGcGCGGGC---GGCGA--GGC- -5'
5610 3' -67.9 NC_001806.1 + 144184 0.69 0.264713
Target:  5'- -aCGGC-GGCCGcCGCagCCGCCGCagCCGc -3'
miRNA:   3'- acGCCGaCCGGC-GCG--GGCGGCGa-GGC- -5'
5610 3' -67.9 NC_001806.1 + 143416 0.68 0.282693
Target:  5'- cGCGGCUcuuacgagcGGcCCG-GCCCGC-GCUCCc -3'
miRNA:   3'- aCGCCGA---------CC-GGCgCGGGCGgCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 140678 0.66 0.386971
Target:  5'- uUGuuGCUGcGCgGCGCCCgcguGCCGCgCUGg -3'
miRNA:   3'- -ACgcCGAC-CGgCGCGGG----CGGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 139128 0.67 0.314783
Target:  5'- cGCGGggGGCUGaUGUCCGUCGC-CCu -3'
miRNA:   3'- aCGCCgaCCGGC-GCGGGCGGCGaGGc -5'
5610 3' -67.9 NC_001806.1 + 136366 0.67 0.356826
Target:  5'- cGgGGCcGG-CGCGCuCCGCgGcCUCCGc -3'
miRNA:   3'- aCgCCGaCCgGCGCG-GGCGgC-GAGGC- -5'
5610 3' -67.9 NC_001806.1 + 136040 0.68 0.295208
Target:  5'- cGCGGCaccGGCCaccccGCGCUCGCuguCGCUCUu -3'
miRNA:   3'- aCGCCGa--CCGG-----CGCGGGCG---GCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 135762 0.67 0.348831
Target:  5'- gUGCGGaaGGCCuggcgaagcugcgGCGCCCGCCcCcCCu -3'
miRNA:   3'- -ACGCCgaCCGG-------------CGCGGGCGGcGaGGc -5'
5610 3' -67.9 NC_001806.1 + 135582 0.7 0.221297
Target:  5'- cGCcaGGUcGGCCGCGCgCUGCuggCGCUCCa -3'
miRNA:   3'- aCG--CCGaCCGGCGCG-GGCG---GCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 134981 0.66 0.386971
Target:  5'- cGCGGC-GGCCaucccgGUGCCCGaugcccCCGCccuggUCCGg -3'
miRNA:   3'- aCGCCGaCCGG------CGCGGGC------GGCG-----AGGC- -5'
5610 3' -67.9 NC_001806.1 + 132656 0.7 0.221297
Target:  5'- cGCGG--GGCCGCGgCCGCuuacgccgCGCUCCu -3'
miRNA:   3'- aCGCCgaCCGGCGCgGGCG--------GCGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.