Results 1 - 20 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5611 | 3' | -55.1 | NC_001806.1 | + | 43443 | 0.66 | 0.94733 |
Target: 5'- uGGUGa--ACCUAGaacGACUGGCGCG-CCa -3' miRNA: 3'- -CCACgcgUGGGUU---UUGGUCGCGCuGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 39894 | 0.66 | 0.94733 |
Target: 5'- cGGUGuCGUugUUGGuGCCGGUGgGGCUa -3' miRNA: 3'- -CCAC-GCGugGGUUuUGGUCGCgCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 115312 | 0.66 | 0.94733 |
Target: 5'- --aGCG-ACCCGucccGGGCCuuCGCGGCCa -3' miRNA: 3'- ccaCGCgUGGGU----UUUGGucGCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 121081 | 0.66 | 0.94733 |
Target: 5'- aGGUG-GCccuuccuaACCCAGAcCCcgGGCGCGcCCu -3' miRNA: 3'- -CCACgCG--------UGGGUUUuGG--UCGCGCuGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 6050 | 0.66 | 0.94733 |
Target: 5'- --gGCGCcguGCCCGAcuCC-GCGcCGGCCc -3' miRNA: 3'- ccaCGCG---UGGGUUuuGGuCGC-GCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 94774 | 0.66 | 0.94733 |
Target: 5'- cGG-GCGCucUCCGuguuGGACCAuGCGCuGGCCc -3' miRNA: 3'- -CCaCGCGu-GGGU----UUUGGU-CGCG-CUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 101136 | 0.66 | 0.94733 |
Target: 5'- cGGccaGCACCCGccccaccucgcAGCCAGCGCGGugguCCa -3' miRNA: 3'- -CCacgCGUGGGUu----------UUGGUCGCGCU----GG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 66840 | 0.66 | 0.946897 |
Target: 5'- cGGUGUGCgccgccuccugggGCCCGGGcACaCGGCgGUGACg -3' miRNA: 3'- -CCACGCG-------------UGGGUUU-UG-GUCG-CGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 104708 | 0.66 | 0.946897 |
Target: 5'- cGGUGguaaugacaaGCGCCCAGAuaacaaugggcauGCCuuauGCcGUGACCg -3' miRNA: 3'- -CCACg---------CGUGGGUUU-------------UGGu---CG-CGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 68724 | 0.66 | 0.946463 |
Target: 5'- --gGCGCcgguCCCGuuggggcagcCCAGCGCGAaCCu -3' miRNA: 3'- ccaCGCGu---GGGUuuu-------GGUCGCGCU-GG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 21850 | 0.66 | 0.942902 |
Target: 5'- --gGcCGCGCCCAAGcCCcGgGCGGCg -3' miRNA: 3'- ccaC-GCGUGGGUUUuGGuCgCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 129663 | 0.66 | 0.942902 |
Target: 5'- -cUGCGCccGCCCGGGccGCCGa-GCGGCCc -3' miRNA: 3'- ccACGCG--UGGGUUU--UGGUcgCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 135383 | 0.66 | 0.942902 |
Target: 5'- --aGCGCACCagcucguGCUcccagaGGCGCGACa -3' miRNA: 3'- ccaCGCGUGGguuu---UGG------UCGCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 88651 | 0.66 | 0.942902 |
Target: 5'- --cGaCGCGCCCGGGgacucGCgCAGggcCGCGGCCa -3' miRNA: 3'- ccaC-GCGUGGGUUU-----UG-GUC---GCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 1803 | 0.66 | 0.942902 |
Target: 5'- cGUGCGCACgCGGuagcgcacguuGCCGcCGCGGCa -3' miRNA: 3'- cCACGCGUGgGUUu----------UGGUcGCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 31754 | 0.66 | 0.942902 |
Target: 5'- uGGUGUuaACCaCAGAGCC---GCGGCCc -3' miRNA: 3'- -CCACGcgUGG-GUUUUGGucgCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 90434 | 0.66 | 0.942902 |
Target: 5'- ----aGCACCCAggccccGAACCuGaCGCGACUu -3' miRNA: 3'- ccacgCGUGGGU------UUUGGuC-GCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 121823 | 0.66 | 0.942902 |
Target: 5'- cGGUGCgGCGcggacaacaucCCCccGACCAGCGCcggguggcGCCu -3' miRNA: 3'- -CCACG-CGU-----------GGGuuUUGGUCGCGc-------UGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 95675 | 0.66 | 0.942902 |
Target: 5'- -cUGCGC-CCUGAcGGCgGGCGCGGgCa -3' miRNA: 3'- ccACGCGuGGGUU-UUGgUCGCGCUgG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 26984 | 0.66 | 0.942902 |
Target: 5'- --cGUGgGCCCGcGAGCgGGC-CGACCg -3' miRNA: 3'- ccaCGCgUGGGU-UUUGgUCGcGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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