miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 101136 0.66 0.94733
Target:  5'- cGGccaGCACCCGccccaccucgcAGCCAGCGCGGugguCCa -3'
miRNA:   3'- -CCacgCGUGGGUu----------UUGGUCGCGCU----GG- -5'
5611 3' -55.1 NC_001806.1 + 43443 0.66 0.94733
Target:  5'- uGGUGa--ACCUAGaacGACUGGCGCG-CCa -3'
miRNA:   3'- -CCACgcgUGGGUU---UUGGUCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 94774 0.66 0.94733
Target:  5'- cGG-GCGCucUCCGuguuGGACCAuGCGCuGGCCc -3'
miRNA:   3'- -CCaCGCGu-GGGU----UUUGGU-CGCG-CUGG- -5'
5611 3' -55.1 NC_001806.1 + 121081 0.66 0.94733
Target:  5'- aGGUG-GCccuuccuaACCCAGAcCCcgGGCGCGcCCu -3'
miRNA:   3'- -CCACgCG--------UGGGUUUuGG--UCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 6050 0.66 0.94733
Target:  5'- --gGCGCcguGCCCGAcuCC-GCGcCGGCCc -3'
miRNA:   3'- ccaCGCG---UGGGUUuuGGuCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 39894 0.66 0.94733
Target:  5'- cGGUGuCGUugUUGGuGCCGGUGgGGCUa -3'
miRNA:   3'- -CCAC-GCGugGGUUuUGGUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 115312 0.66 0.94733
Target:  5'- --aGCG-ACCCGucccGGGCCuuCGCGGCCa -3'
miRNA:   3'- ccaCGCgUGGGU----UUUGGucGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 66840 0.66 0.946897
Target:  5'- cGGUGUGCgccgccuccugggGCCCGGGcACaCGGCgGUGACg -3'
miRNA:   3'- -CCACGCG-------------UGGGUUU-UG-GUCG-CGCUGg -5'
5611 3' -55.1 NC_001806.1 + 104708 0.66 0.946897
Target:  5'- cGGUGguaaugacaaGCGCCCAGAuaacaaugggcauGCCuuauGCcGUGACCg -3'
miRNA:   3'- -CCACg---------CGUGGGUUU-------------UGGu---CG-CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 68724 0.66 0.946463
Target:  5'- --gGCGCcgguCCCGuuggggcagcCCAGCGCGAaCCu -3'
miRNA:   3'- ccaCGCGu---GGGUuuu-------GGUCGCGCU-GG- -5'
5611 3' -55.1 NC_001806.1 + 135383 0.66 0.942902
Target:  5'- --aGCGCACCagcucguGCUcccagaGGCGCGACa -3'
miRNA:   3'- ccaCGCGUGGguuu---UGG------UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 121823 0.66 0.942902
Target:  5'- cGGUGCgGCGcggacaacaucCCCccGACCAGCGCcggguggcGCCu -3'
miRNA:   3'- -CCACG-CGU-----------GGGuuUUGGUCGCGc-------UGG- -5'
5611 3' -55.1 NC_001806.1 + 129663 0.66 0.942902
Target:  5'- -cUGCGCccGCCCGGGccGCCGa-GCGGCCc -3'
miRNA:   3'- ccACGCG--UGGGUUU--UGGUcgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 88651 0.66 0.942902
Target:  5'- --cGaCGCGCCCGGGgacucGCgCAGggcCGCGGCCa -3'
miRNA:   3'- ccaC-GCGUGGGUUU-----UG-GUC---GCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 31754 0.66 0.942902
Target:  5'- uGGUGUuaACCaCAGAGCC---GCGGCCc -3'
miRNA:   3'- -CCACGcgUGG-GUUUUGGucgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 1803 0.66 0.942902
Target:  5'- cGUGCGCACgCGGuagcgcacguuGCCGcCGCGGCa -3'
miRNA:   3'- cCACGCGUGgGUUu----------UGGUcGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 95675 0.66 0.942902
Target:  5'- -cUGCGC-CCUGAcGGCgGGCGCGGgCa -3'
miRNA:   3'- ccACGCGuGGGUU-UUGgUCGCGCUgG- -5'
5611 3' -55.1 NC_001806.1 + 21850 0.66 0.942902
Target:  5'- --gGcCGCGCCCAAGcCCcGgGCGGCg -3'
miRNA:   3'- ccaC-GCGUGGGUUUuGGuCgCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 26984 0.66 0.942902
Target:  5'- --cGUGgGCCCGcGAGCgGGC-CGACCg -3'
miRNA:   3'- ccaCGCgUGGGU-UUUGgUCGcGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 90434 0.66 0.942902
Target:  5'- ----aGCACCCAggccccGAACCuGaCGCGACUu -3'
miRNA:   3'- ccacgCGUGGGU------UUUGGuC-GCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.