miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5616 5' -53.5 NC_001806.1 + 68725 0.66 0.967989
Target:  5'- gCGCCGG--UCCCGUUGGGGcagcCCAGcGCg -3'
miRNA:   3'- -GUGGCUcuGGGGUAACCCU----GGUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 20172 0.66 0.967989
Target:  5'- -cCCGGGcccGCCCCc--GGGGCCGGcGCg -3'
miRNA:   3'- guGGCUC---UGGGGuaaCCCUGGUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 106347 0.66 0.964754
Target:  5'- aCACCGcccccccGACCgCCgGUUGGGGCCcg-GCg -3'
miRNA:   3'- -GUGGCu------CUGG-GG-UAACCCUGGuuaUG- -5'
5616 5' -53.5 NC_001806.1 + 125980 0.66 0.964754
Target:  5'- cCGCUGGGGCCCCca-GGGuCCGu--- -3'
miRNA:   3'- -GUGGCUCUGGGGuaaCCCuGGUuaug -5'
5616 5' -53.5 NC_001806.1 + 84423 0.66 0.961297
Target:  5'- -cCCGAGACgcagCCCGgggacgGGGGCCGGUu- -3'
miRNA:   3'- guGGCUCUG----GGGUaa----CCCUGGUUAug -5'
5616 5' -53.5 NC_001806.1 + 68582 0.66 0.961297
Target:  5'- gCACCGcggcGGCCC---UGGGGCCGGUccGCg -3'
miRNA:   3'- -GUGGCu---CUGGGguaACCCUGGUUA--UG- -5'
5616 5' -53.5 NC_001806.1 + 102363 0.66 0.961297
Target:  5'- cCGCCGGGAgcaCCCCGUggugcaucagcgUGGcGAUCAcgauGUGCg -3'
miRNA:   3'- -GUGGCUCU---GGGGUA------------ACC-CUGGU----UAUG- -5'
5616 5' -53.5 NC_001806.1 + 21033 0.66 0.961297
Target:  5'- cCAUCGAGAgUCCGUaGGuGACCuaccGUGCu -3'
miRNA:   3'- -GUGGCUCUgGGGUAaCC-CUGGu---UAUG- -5'
5616 5' -53.5 NC_001806.1 + 51694 0.66 0.961297
Target:  5'- -cCCGAgGACCCCGUgGGcGACUGcgACc -3'
miRNA:   3'- guGGCU-CUGGGGUAaCC-CUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 146841 0.66 0.957612
Target:  5'- uGCgGcGGCUCCAgccgGGGACCGcgGCc -3'
miRNA:   3'- gUGgCuCUGGGGUaa--CCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 93590 0.66 0.957612
Target:  5'- gGCCcgGGGGCCCC---GGGACCG--GCa -3'
miRNA:   3'- gUGG--CUCUGGGGuaaCCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 38870 0.66 0.957612
Target:  5'- aAUUGGGACCCaugggcgggguCGUUGGGAuCCAGgcUACa -3'
miRNA:   3'- gUGGCUCUGGG-----------GUAACCCU-GGUU--AUG- -5'
5616 5' -53.5 NC_001806.1 + 55736 0.66 0.957612
Target:  5'- gACCcggGGGACCCCGaugugGGGGCCuc-GCu -3'
miRNA:   3'- gUGG---CUCUGGGGUaa---CCCUGGuuaUG- -5'
5616 5' -53.5 NC_001806.1 + 97419 0.66 0.957612
Target:  5'- uCACCGuGGCCUgGgacUGGGuGCCAAaGCg -3'
miRNA:   3'- -GUGGCuCUGGGgUa--ACCC-UGGUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 43481 0.66 0.956847
Target:  5'- -uUCGAGGCCCCcacgaucgacGGGGCCGugGCg -3'
miRNA:   3'- guGGCUCUGGGGuaa-------CCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 105167 0.66 0.953693
Target:  5'- uGCCGAG-CCCCAgagcaacgcGGGcCCAcgACc -3'
miRNA:   3'- gUGGCUCuGGGGUaa-------CCCuGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 21963 0.67 0.949538
Target:  5'- gGCCGGGcaGCCCCGgcGGGucgagcuggacGCCGAcGCg -3'
miRNA:   3'- gUGGCUC--UGGGGUaaCCC-----------UGGUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 77536 0.67 0.949538
Target:  5'- -cCCGGGGCCCC--UGGuGcugcgcgaggccACCAGUACg -3'
miRNA:   3'- guGGCUCUGGGGuaACC-C------------UGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 90077 0.67 0.945141
Target:  5'- uGCCGGGAuuacCUCCGUUcGcGGACCGAUugACa -3'
miRNA:   3'- gUGGCUCU----GGGGUAA-C-CCUGGUUA--UG- -5'
5616 5' -53.5 NC_001806.1 + 78529 0.67 0.940501
Target:  5'- aCGCUGAG-CCCCucgggGGGGCgCGAgGCg -3'
miRNA:   3'- -GUGGCUCuGGGGuaa--CCCUG-GUUaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.