miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 114166 0.66 0.709008
Target:  5'- cGGCGAgGaGuGCCCcaGCGACCCCGUGa -3'
miRNA:   3'- cUCGUUgCgCcCGGG--UGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 119602 0.66 0.709008
Target:  5'- gGAGCcccccGGCGgGGGCCgCuuugUGGCCCCAg- -3'
miRNA:   3'- -CUCG-----UUGCgCCCGG-Gu---GCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 147026 0.66 0.709008
Target:  5'- aGGUAGCGCGugaggccGCCCGCGgggacgGCCCCGg- -3'
miRNA:   3'- cUCGUUGCGCc------CGGGUGC------UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 21772 0.66 0.709008
Target:  5'- cGGGCGggguccgucgaGCGCGGcGCCgGCaGCCCCcgGg -3'
miRNA:   3'- -CUCGU-----------UGCGCC-CGGgUGcUGGGGuaU- -5'
5617 3' -60.5 NC_001806.1 + 90412 0.66 0.709008
Target:  5'- cGGCGGC-C-GGCaCCugGACCCCAg- -3'
miRNA:   3'- cUCGUUGcGcCCG-GGugCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 92922 0.66 0.708027
Target:  5'- aGGGCGGgGCGGGCCUggaggccGgGGCCCgCGc- -3'
miRNA:   3'- -CUCGUUgCGCCCGGG-------UgCUGGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 59609 0.66 0.699171
Target:  5'- uGGUcaAGCGCcgGGGCCUugGgGCCCCGg- -3'
miRNA:   3'- cUCG--UUGCG--CCCGGGugC-UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 77954 0.66 0.699171
Target:  5'- gGGGUGACGCGgcGGCCCcggggccgccGCucgGACCCCAg- -3'
miRNA:   3'- -CUCGUUGCGC--CCGGG----------UG---CUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 87655 0.66 0.699171
Target:  5'- -cGCGuuGCGCGGGCCCgGCGGCgUaGUAg -3'
miRNA:   3'- cuCGU--UGCGCCCGGG-UGCUGgGgUAU- -5'
5617 3' -60.5 NC_001806.1 + 23517 0.66 0.699171
Target:  5'- cGGCc-CGCcgaGGGCCC-CGACCCCc-- -3'
miRNA:   3'- cUCGuuGCG---CCCGGGuGCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 131607 0.66 0.699171
Target:  5'- cGGCAGCaUGGGaCCCACaGACcgCCCGUGa -3'
miRNA:   3'- cUCGUUGcGCCC-GGGUG-CUG--GGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 49270 0.66 0.693242
Target:  5'- cGAGCcgcccgugcgccgucGACGgGaaGGCCCGCGAgCCCGa- -3'
miRNA:   3'- -CUCG---------------UUGCgC--CCGGGUGCUgGGGUau -5'
5617 3' -60.5 NC_001806.1 + 2765 0.66 0.689279
Target:  5'- gGGGCGcGgGCGGGCCUgcgccgcgGCGGCCCgGg- -3'
miRNA:   3'- -CUCGU-UgCGCCCGGG--------UGCUGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 70860 0.66 0.689279
Target:  5'- -cGCGGcCGCGGGaCC-CGAgCCCGUGg -3'
miRNA:   3'- cuCGUU-GCGCCCgGGuGCUgGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 132485 0.66 0.689279
Target:  5'- uGGCAuaccacgguccACGCcgcccccgGGGCCCugGcCCCCGUc -3'
miRNA:   3'- cUCGU-----------UGCG--------CCCGGGugCuGGGGUAu -5'
5617 3' -60.5 NC_001806.1 + 72138 0.66 0.689279
Target:  5'- cGGCc-CGUGGGCCCuGCGcCCCCu-- -3'
miRNA:   3'- cUCGuuGCGCCCGGG-UGCuGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 49597 0.66 0.689279
Target:  5'- cGGCGGCG-GGGCCCGuu-CCCCGc- -3'
miRNA:   3'- cUCGUUGCgCCCGGGUgcuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 22641 0.66 0.688287
Target:  5'- cGAGC-GCGCGGuGCCCgccggguACGGCgCCGc- -3'
miRNA:   3'- -CUCGuUGCGCC-CGGG-------UGCUGgGGUau -5'
5617 3' -60.5 NC_001806.1 + 22557 0.66 0.679342
Target:  5'- -cGCGGCGCugacgGGGgCCGCGgggaGCCCCGg- -3'
miRNA:   3'- cuCGUUGCG-----CCCgGGUGC----UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 23721 0.66 0.679342
Target:  5'- -cGguGCGcCGGGCCCGC--CCCCGc- -3'
miRNA:   3'- cuCguUGC-GCCCGGGUGcuGGGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.