Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5617 | 3' | -60.5 | NC_001806.1 | + | 114166 | 0.66 | 0.709008 |
Target: 5'- cGGCGAgGaGuGCCCcaGCGACCCCGUGa -3' miRNA: 3'- cUCGUUgCgCcCGGG--UGCUGGGGUAU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 119602 | 0.66 | 0.709008 |
Target: 5'- gGAGCcccccGGCGgGGGCCgCuuugUGGCCCCAg- -3' miRNA: 3'- -CUCG-----UUGCgCCCGG-Gu---GCUGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 90412 | 0.66 | 0.709008 |
Target: 5'- cGGCGGC-C-GGCaCCugGACCCCAg- -3' miRNA: 3'- cUCGUUGcGcCCG-GGugCUGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 147026 | 0.66 | 0.709008 |
Target: 5'- aGGUAGCGCGugaggccGCCCGCGgggacgGCCCCGg- -3' miRNA: 3'- cUCGUUGCGCc------CGGGUGC------UGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 21772 | 0.66 | 0.709008 |
Target: 5'- cGGGCGggguccgucgaGCGCGGcGCCgGCaGCCCCcgGg -3' miRNA: 3'- -CUCGU-----------UGCGCC-CGGgUGcUGGGGuaU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 92922 | 0.66 | 0.708027 |
Target: 5'- aGGGCGGgGCGGGCCUggaggccGgGGCCCgCGc- -3' miRNA: 3'- -CUCGUUgCGCCCGGG-------UgCUGGG-GUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 131607 | 0.66 | 0.699171 |
Target: 5'- cGGCAGCaUGGGaCCCACaGACcgCCCGUGa -3' miRNA: 3'- cUCGUUGcGCCC-GGGUG-CUG--GGGUAU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 23517 | 0.66 | 0.699171 |
Target: 5'- cGGCc-CGCcgaGGGCCC-CGACCCCc-- -3' miRNA: 3'- cUCGuuGCG---CCCGGGuGCUGGGGuau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 77954 | 0.66 | 0.699171 |
Target: 5'- gGGGUGACGCGgcGGCCCcggggccgccGCucgGACCCCAg- -3' miRNA: 3'- -CUCGUUGCGC--CCGGG----------UG---CUGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 87655 | 0.66 | 0.699171 |
Target: 5'- -cGCGuuGCGCGGGCCCgGCGGCgUaGUAg -3' miRNA: 3'- cuCGU--UGCGCCCGGG-UGCUGgGgUAU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 59609 | 0.66 | 0.699171 |
Target: 5'- uGGUcaAGCGCcgGGGCCUugGgGCCCCGg- -3' miRNA: 3'- cUCG--UUGCG--CCCGGGugC-UGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 49270 | 0.66 | 0.693242 |
Target: 5'- cGAGCcgcccgugcgccgucGACGgGaaGGCCCGCGAgCCCGa- -3' miRNA: 3'- -CUCG---------------UUGCgC--CCGGGUGCUgGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 2765 | 0.66 | 0.689279 |
Target: 5'- gGGGCGcGgGCGGGCCUgcgccgcgGCGGCCCgGg- -3' miRNA: 3'- -CUCGU-UgCGCCCGGG--------UGCUGGGgUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 49597 | 0.66 | 0.689279 |
Target: 5'- cGGCGGCG-GGGCCCGuu-CCCCGc- -3' miRNA: 3'- cUCGUUGCgCCCGGGUgcuGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 132485 | 0.66 | 0.689279 |
Target: 5'- uGGCAuaccacgguccACGCcgcccccgGGGCCCugGcCCCCGUc -3' miRNA: 3'- cUCGU-----------UGCG--------CCCGGGugCuGGGGUAu -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 72138 | 0.66 | 0.689279 |
Target: 5'- cGGCc-CGUGGGCCCuGCGcCCCCu-- -3' miRNA: 3'- cUCGuuGCGCCCGGG-UGCuGGGGuau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 70860 | 0.66 | 0.689279 |
Target: 5'- -cGCGGcCGCGGGaCC-CGAgCCCGUGg -3' miRNA: 3'- cuCGUU-GCGCCCgGGuGCUgGGGUAU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 22641 | 0.66 | 0.688287 |
Target: 5'- cGAGC-GCGCGGuGCCCgccggguACGGCgCCGc- -3' miRNA: 3'- -CUCGuUGCGCC-CGGG-------UGCUGgGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 23721 | 0.66 | 0.679342 |
Target: 5'- -cGguGCGcCGGGCCCGC--CCCCGc- -3' miRNA: 3'- cuCguUGC-GCCCGGGUGcuGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 22557 | 0.66 | 0.679342 |
Target: 5'- -cGCGGCGCugacgGGGgCCGCGgggaGCCCCGg- -3' miRNA: 3'- cuCGUUGCG-----CCCgGGUGC----UGGGGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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