miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5621 5' -56.3 NC_001806.1 + 72398 0.66 0.912283
Target:  5'- nGGaCUUGAcgGCC--GCGGCUCUGCAu -3'
miRNA:   3'- -CCgGAGCUuaUGGcuCGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 135757 0.66 0.912283
Target:  5'- cGGCCgugCGGAagGCCuGGCGAagCUGCGg -3'
miRNA:   3'- -CCGGa--GCUUa-UGGcUCGCUggGACGU- -5'
5621 5' -56.3 NC_001806.1 + 16148 0.66 0.906259
Target:  5'- cGGCgCUUagGAGcUGCCGGGaGACCgCUGCGa -3'
miRNA:   3'- -CCG-GAG--CUU-AUGGCUCgCUGG-GACGU- -5'
5621 5' -56.3 NC_001806.1 + 90340 0.66 0.906259
Target:  5'- gGGgCUCGGggGUACCGcGGUGuCCCUGa- -3'
miRNA:   3'- -CCgGAGCU--UAUGGC-UCGCuGGGACgu -5'
5621 5' -56.3 NC_001806.1 + 23831 0.66 0.906259
Target:  5'- cGCCUCGGGcccgcugcGCCGcauGGCGGCCUggaUGCGc -3'
miRNA:   3'- cCGGAGCUUa-------UGGC---UCGCUGGG---ACGU- -5'
5621 5' -56.3 NC_001806.1 + 135026 0.66 0.906259
Target:  5'- cGCCUCGcgcAGUucuuCCGGGCGACC--GCGa -3'
miRNA:   3'- cCGGAGC---UUAu---GGCUCGCUGGgaCGU- -5'
5621 5' -56.3 NC_001806.1 + 126887 0.66 0.906259
Target:  5'- gGGCuCUCGGG-GCCGcAG-GACCCaGCAa -3'
miRNA:   3'- -CCG-GAGCUUaUGGC-UCgCUGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 63123 0.66 0.900004
Target:  5'- aGCUUCaGGcagGCCGuguGCaGGCCCUGCAu -3'
miRNA:   3'- cCGGAG-CUua-UGGCu--CG-CUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 127770 0.66 0.893519
Target:  5'- gGGCCUgUGGcgGCCGucucGCGAUCCgcGCAu -3'
miRNA:   3'- -CCGGA-GCUuaUGGCu---CGCUGGGa-CGU- -5'
5621 5' -56.3 NC_001806.1 + 72375 0.66 0.893519
Target:  5'- gGGCC-CGGA-ACCc-GCGGCuCCUGCGg -3'
miRNA:   3'- -CCGGaGCUUaUGGcuCGCUG-GGACGU- -5'
5621 5' -56.3 NC_001806.1 + 77116 0.66 0.893519
Target:  5'- cGCCaaGAGcGCCGAGCGGgCCgggGCc -3'
miRNA:   3'- cCGGagCUUaUGGCUCGCUgGGa--CGu -5'
5621 5' -56.3 NC_001806.1 + 105349 0.66 0.893519
Target:  5'- cGCCcgcCGGcUGCCGGGaCG-CCCUGCu -3'
miRNA:   3'- cCGGa--GCUuAUGGCUC-GCuGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 89497 0.66 0.886808
Target:  5'- gGGCCUuguuugucuggCGGAU-CCGGGCGGCgagCUGCu -3'
miRNA:   3'- -CCGGA-----------GCUUAuGGCUCGCUGg--GACGu -5'
5621 5' -56.3 NC_001806.1 + 143407 0.66 0.886808
Target:  5'- cGGCCgggucgCGGcucuuaCGAGCGGCCCgGCc -3'
miRNA:   3'- -CCGGa-----GCUuaug--GCUCGCUGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 41608 0.66 0.886808
Target:  5'- cGCCgCGAucGCCGGGgGugugggGCCCUGCu -3'
miRNA:   3'- cCGGaGCUuaUGGCUCgC------UGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 58068 0.66 0.879874
Target:  5'- aGGCC-CGGGagGCCGAGCu-CCCgGCu -3'
miRNA:   3'- -CCGGaGCUUa-UGGCUCGcuGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 18955 0.66 0.879874
Target:  5'- uGGCaCUgCGugggGGUcCCGGGCGACCC-GCAg -3'
miRNA:   3'- -CCG-GA-GC----UUAuGGCUCGCUGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 59157 0.66 0.879874
Target:  5'- gGGUCUCGggUGCgGgacgcggagggGGCGuauGCCgCUGCGa -3'
miRNA:   3'- -CCGGAGCuuAUGgC-----------UCGC---UGG-GACGU- -5'
5621 5' -56.3 NC_001806.1 + 90971 0.67 0.865357
Target:  5'- cGGCCuUCGAAgccaGCCaGGGUaaGACCCcGCGg -3'
miRNA:   3'- -CCGG-AGCUUa---UGG-CUCG--CUGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 33529 0.67 0.865357
Target:  5'- cGGCCUaaUGGAUuuCCGGGCGcggugcCCCUGUc -3'
miRNA:   3'- -CCGGA--GCUUAu-GGCUCGCu-----GGGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.