Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5622 | 3' | -59.7 | NC_001806.1 | + | 30293 | 0.65 | 0.786509 |
Target: 5'- gGgcGGAgcCGGCCGCCcGCcCCGCggacgcgCGCCg -3' miRNA: 3'- -CauCCU--GCUGGUGGaCGaGGCG-------GCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 4183 | 0.66 | 0.782033 |
Target: 5'- -gGGGGCGggggcccggcgccggGCCACg-GCUCC-CCGCUg -3' miRNA: 3'- caUCCUGC---------------UGGUGgaCGAGGcGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 117763 | 0.66 | 0.778429 |
Target: 5'- cGUGGcGACGGCCGaguCCUgGCUgcuauuucccUCGaCCGCCa -3' miRNA: 3'- -CAUC-CUGCUGGU---GGA-CGA----------GGC-GGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 120360 | 0.66 | 0.778429 |
Target: 5'- -cGGcGACGACCuCCcgGC-CCGCUuuGCCg -3' miRNA: 3'- caUC-CUGCUGGuGGa-CGaGGCGG--CGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 69003 | 0.66 | 0.778429 |
Target: 5'- -cGGGAgauCGACCcgGCCauaaUGaUUCCGCCGCUc -3' miRNA: 3'- caUCCU---GCUGG--UGG----AC-GAGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 75254 | 0.66 | 0.778429 |
Target: 5'- -cGGuGACGGCC-CUggGCgCgGCCGCCa -3' miRNA: 3'- caUC-CUGCUGGuGGa-CGaGgCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 21147 | 0.66 | 0.778429 |
Target: 5'- --cGGGCc-CCACCgacGggCCGCCGCCc -3' miRNA: 3'- cauCCUGcuGGUGGa--CgaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 9804 | 0.66 | 0.778429 |
Target: 5'- gGUGGGugGGCUcgGCCaaaUCCG-CGCCg -3' miRNA: 3'- -CAUCCugCUGG--UGGacgAGGCgGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 148024 | 0.66 | 0.778429 |
Target: 5'- -cGGGA--GCCGCCg---CCGCCGCUg -3' miRNA: 3'- caUCCUgcUGGUGGacgaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 138951 | 0.66 | 0.769333 |
Target: 5'- -gGGGAaccggaGACCACCg---CCGCCGUUc -3' miRNA: 3'- caUCCUg-----CUGGUGGacgaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 73143 | 0.66 | 0.769333 |
Target: 5'- -gAGGACGACgGgCCcacgGUUCCGgCGUCc -3' miRNA: 3'- caUCCUGCUGgU-GGa---CGAGGCgGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 26654 | 0.66 | 0.769333 |
Target: 5'- -gAGGccCGGcCCACCg---CCGCCGCCc -3' miRNA: 3'- caUCCu-GCU-GGUGGacgaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 24599 | 0.66 | 0.760122 |
Target: 5'- -gAGGAgGcCCACUcGCa-CGCCGCCu -3' miRNA: 3'- caUCCUgCuGGUGGaCGagGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 33759 | 0.66 | 0.760122 |
Target: 5'- -cGGcGGCGGCUGCggcggCUGCggCgGCCGCCg -3' miRNA: 3'- caUC-CUGCUGGUG-----GACGa-GgCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 22306 | 0.66 | 0.760122 |
Target: 5'- -gGGGACguggcgcugGACCagGCCUGCUUccggaucucgggCGCCGCg -3' miRNA: 3'- caUCCUG---------CUGG--UGGACGAG------------GCGGCGg -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 1339 | 0.66 | 0.760122 |
Target: 5'- -gGGGGCGugGCCaaGCCcGcCUCCGCCcCCa -3' miRNA: 3'- caUCCUGC--UGG--UGGaC-GAGGCGGcGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 22883 | 0.66 | 0.760122 |
Target: 5'- -cGGGGCuGGCCgggGCCcgGC-CCGCCaGCCc -3' miRNA: 3'- caUCCUG-CUGG---UGGa-CGaGGCGG-CGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 45118 | 0.66 | 0.760122 |
Target: 5'- aGUAGcGACGGCCGugUGC-CaGUCGCCa -3' miRNA: 3'- -CAUC-CUGCUGGUggACGaGgCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 134673 | 0.66 | 0.760122 |
Target: 5'- -cAGGACcGCCACC-GCgaaGCCGCg -3' miRNA: 3'- caUCCUGcUGGUGGaCGaggCGGCGg -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 115497 | 0.66 | 0.760122 |
Target: 5'- cGUGGaGACGGguucggcgguguCCACg-GCcaCCGCCGCCa -3' miRNA: 3'- -CAUC-CUGCU------------GGUGgaCGa-GGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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