miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 30293 0.65 0.786509
Target:  5'- gGgcGGAgcCGGCCGCCcGCcCCGCggacgcgCGCCg -3'
miRNA:   3'- -CauCCU--GCUGGUGGaCGaGGCG-------GCGG- -5'
5622 3' -59.7 NC_001806.1 + 4183 0.66 0.782033
Target:  5'- -gGGGGCGggggcccggcgccggGCCACg-GCUCC-CCGCUg -3'
miRNA:   3'- caUCCUGC---------------UGGUGgaCGAGGcGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 117763 0.66 0.778429
Target:  5'- cGUGGcGACGGCCGaguCCUgGCUgcuauuucccUCGaCCGCCa -3'
miRNA:   3'- -CAUC-CUGCUGGU---GGA-CGA----------GGC-GGCGG- -5'
5622 3' -59.7 NC_001806.1 + 120360 0.66 0.778429
Target:  5'- -cGGcGACGACCuCCcgGC-CCGCUuuGCCg -3'
miRNA:   3'- caUC-CUGCUGGuGGa-CGaGGCGG--CGG- -5'
5622 3' -59.7 NC_001806.1 + 69003 0.66 0.778429
Target:  5'- -cGGGAgauCGACCcgGCCauaaUGaUUCCGCCGCUc -3'
miRNA:   3'- caUCCU---GCUGG--UGG----AC-GAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 75254 0.66 0.778429
Target:  5'- -cGGuGACGGCC-CUggGCgCgGCCGCCa -3'
miRNA:   3'- caUC-CUGCUGGuGGa-CGaGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 21147 0.66 0.778429
Target:  5'- --cGGGCc-CCACCgacGggCCGCCGCCc -3'
miRNA:   3'- cauCCUGcuGGUGGa--CgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 9804 0.66 0.778429
Target:  5'- gGUGGGugGGCUcgGCCaaaUCCG-CGCCg -3'
miRNA:   3'- -CAUCCugCUGG--UGGacgAGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 148024 0.66 0.778429
Target:  5'- -cGGGA--GCCGCCg---CCGCCGCUg -3'
miRNA:   3'- caUCCUgcUGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 138951 0.66 0.769333
Target:  5'- -gGGGAaccggaGACCACCg---CCGCCGUUc -3'
miRNA:   3'- caUCCUg-----CUGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 73143 0.66 0.769333
Target:  5'- -gAGGACGACgGgCCcacgGUUCCGgCGUCc -3'
miRNA:   3'- caUCCUGCUGgU-GGa---CGAGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 26654 0.66 0.769333
Target:  5'- -gAGGccCGGcCCACCg---CCGCCGCCc -3'
miRNA:   3'- caUCCu-GCU-GGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 24599 0.66 0.760122
Target:  5'- -gAGGAgGcCCACUcGCa-CGCCGCCu -3'
miRNA:   3'- caUCCUgCuGGUGGaCGagGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 33759 0.66 0.760122
Target:  5'- -cGGcGGCGGCUGCggcggCUGCggCgGCCGCCg -3'
miRNA:   3'- caUC-CUGCUGGUG-----GACGa-GgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 22306 0.66 0.760122
Target:  5'- -gGGGACguggcgcugGACCagGCCUGCUUccggaucucgggCGCCGCg -3'
miRNA:   3'- caUCCUG---------CUGG--UGGACGAG------------GCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 1339 0.66 0.760122
Target:  5'- -gGGGGCGugGCCaaGCCcGcCUCCGCCcCCa -3'
miRNA:   3'- caUCCUGC--UGG--UGGaC-GAGGCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 22883 0.66 0.760122
Target:  5'- -cGGGGCuGGCCgggGCCcgGC-CCGCCaGCCc -3'
miRNA:   3'- caUCCUG-CUGG---UGGa-CGaGGCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 45118 0.66 0.760122
Target:  5'- aGUAGcGACGGCCGugUGC-CaGUCGCCa -3'
miRNA:   3'- -CAUC-CUGCUGGUggACGaGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 134673 0.66 0.760122
Target:  5'- -cAGGACcGCCACC-GCgaaGCCGCg -3'
miRNA:   3'- caUCCUGcUGGUGGaCGaggCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 115497 0.66 0.760122
Target:  5'- cGUGGaGACGGguucggcgguguCCACg-GCcaCCGCCGCCa -3'
miRNA:   3'- -CAUC-CUGCU------------GGUGgaCGa-GGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.