miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 127211 0.65 0.469989
Target:  5'- gCGGGcCCCGGGGagacaGCGCcugcguucaucggaCCCCCCcUCGc -3'
miRNA:   3'- gGUCU-GGGCCCC-----CGCG--------------GGGGGGcAGC- -5'
5623 5' -67.6 NC_001806.1 + 60000 0.66 0.467432
Target:  5'- -gGGACCCGGGGGacgGCCggguccggagccgcgCUgCCGUCc -3'
miRNA:   3'- ggUCUGGGCCCCCg--CGG---------------GGgGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 5079 0.66 0.464035
Target:  5'- uCUGGGCUCGGgguGGGCGgCggCCCGUCGg -3'
miRNA:   3'- -GGUCUGGGCC---CCCGCgGggGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 24796 0.66 0.464035
Target:  5'- --cGGCCCGGGGGCcCUgCCgCCGgCGc -3'
miRNA:   3'- gguCUGGGCCCCCGcGGgGG-GGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 88805 0.66 0.464035
Target:  5'- gUCAGGCCCaGGaGCGUgugacggUCCCCGUCGg -3'
miRNA:   3'- -GGUCUGGGcCCcCGCGg------GGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 28224 0.66 0.464035
Target:  5'- gCCAuAUUgGGGGGCGCCauguugggggaCCCCCGa-- -3'
miRNA:   3'- -GGUcUGGgCCCCCGCGG-----------GGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 107721 0.66 0.464035
Target:  5'- aUCGGugCgGGGGGCaGUCUgCCaaCGUCGa -3'
miRNA:   3'- -GGUCugGgCCCCCG-CGGGgGG--GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 118824 0.66 0.455598
Target:  5'- uCCAGACUCGGGcucaugccaccGGCGaCUguaCCCCGUgGu -3'
miRNA:   3'- -GGUCUGGGCCC-----------CCGC-GGg--GGGGCAgC- -5'
5623 5' -67.6 NC_001806.1 + 5048 0.66 0.455598
Target:  5'- gCCccACCCGaGGGCcCCCCgCUCGUCGc -3'
miRNA:   3'- -GGucUGGGCcCCCGcGGGG-GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 21857 0.66 0.455598
Target:  5'- cCCaAGcCCCGGGcGGCGgCgaggaCCCCCG-CGg -3'
miRNA:   3'- -GG-UCuGGGCCC-CCGCgG-----GGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 71080 0.66 0.455598
Target:  5'- -gGGGCCUGGGGGgacuacagccuCGgCCCCCUGg-- -3'
miRNA:   3'- ggUCUGGGCCCCC-----------GCgGGGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 28021 0.66 0.455598
Target:  5'- gCAGACUCGGGc-CGCCCCCUC-UCc -3'
miRNA:   3'- gGUCUGGGCCCccGCGGGGGGGcAGc -5'
5623 5' -67.6 NC_001806.1 + 77445 0.66 0.455598
Target:  5'- cCCGcGCCCGGGcgucCGCCCCaCCCGg-- -3'
miRNA:   3'- -GGUcUGGGCCCcc--GCGGGG-GGGCagc -5'
5623 5' -67.6 NC_001806.1 + 46104 0.66 0.455598
Target:  5'- uCCGG-CCCGGggccugcgcGGGCGCCUCCgCCa--- -3'
miRNA:   3'- -GGUCuGGGCC---------CCCGCGGGGG-GGcagc -5'
5623 5' -67.6 NC_001806.1 + 46180 0.66 0.455598
Target:  5'- cCCGGGCCCcccgaacccagcGGGuGGCGaCUaaggCCCCCG-CGg -3'
miRNA:   3'- -GGUCUGGG------------CCC-CCGC-GG----GGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 24891 0.66 0.454759
Target:  5'- -aGGugCUGGGGGCggaggcgggcuugGCCacgCCCCCG-CGg -3'
miRNA:   3'- ggUCugGGCCCCCG-------------CGG---GGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 108357 0.66 0.447245
Target:  5'- uUCAGGcCCCGGuGGuGcCGCUCCCCCa--- -3'
miRNA:   3'- -GGUCU-GGGCC-CC-C-GCGGGGGGGcagc -5'
5623 5' -67.6 NC_001806.1 + 137641 0.66 0.447245
Target:  5'- aCGGACCCuGGgguuggccgaGGGCGCCCugacgcgguuggCCCCGg-- -3'
miRNA:   3'- gGUCUGGG-CC----------CCCGCGGG------------GGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 73453 0.66 0.447245
Target:  5'- cCCAGGCCgGGGuGGCcgGCCCggCCGcCGc -3'
miRNA:   3'- -GGUCUGGgCCC-CCG--CGGGggGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 141417 0.66 0.438978
Target:  5'- aCCAGGCCgGGGcGGCGCgcggCCaaCCGgCGg -3'
miRNA:   3'- -GGUCUGGgCCC-CCGCG----GGggGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.