miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 151695 0.67 0.728575
Target:  5'- -cGGgGGGGcCCGGGCUGcccGCCGccaccgcuuuaaaGGGCCg -3'
miRNA:   3'- aaCUgCUCC-GGUUCGAU---CGGC-------------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 151535 0.67 0.739357
Target:  5'- -cGGCGcccguGGGcCCGGGC-GGCCGGGGgCg -3'
miRNA:   3'- aaCUGC-----UCC-GGUUCGaUCGGCUCCgG- -5'
5628 5' -58.1 NC_001806.1 + 151449 0.66 0.795852
Target:  5'- -gGGCGGcGGCgGGGC-GGCCGcGGGCg -3'
miRNA:   3'- aaCUGCU-CCGgUUCGaUCGGC-UCCGg -5'
5628 5' -58.1 NC_001806.1 + 151322 0.66 0.786754
Target:  5'- cUGGCGccGGCuCGGGCggggGGCUGuccGGCCa -3'
miRNA:   3'- aACUGCu-CCG-GUUCGa---UCGGCu--CCGG- -5'
5628 5' -58.1 NC_001806.1 + 151279 0.73 0.418884
Target:  5'- -gGugGGGGCCGgggccggggggcggcGGCggugGGCCG-GGCCu -3'
miRNA:   3'- aaCugCUCCGGU---------------UCGa---UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 150997 0.78 0.202734
Target:  5'- -cGGCGc-GCCAGGCgggcGGCCGAGGCCc -3'
miRNA:   3'- aaCUGCucCGGUUCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 150664 0.66 0.813597
Target:  5'- gUUGGCcGGGCCccgccgcgcuGGCggccGCCGAuGGCCa -3'
miRNA:   3'- -AACUGcUCCGGu---------UCGau--CGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 150492 0.66 0.786754
Target:  5'- --aGCG-GGaaGGGC-GGCCGGGGCCg -3'
miRNA:   3'- aacUGCuCCggUUCGaUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 148085 0.67 0.719679
Target:  5'- -cGAUGGGcGCCGaggggGGCgcuguccgAGCCGcGGCCg -3'
miRNA:   3'- aaCUGCUC-CGGU-----UCGa-------UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 147662 0.69 0.62845
Target:  5'- -gGGCGGgcGGCC-GGCUccgccccgggGGCCGGGGCg -3'
miRNA:   3'- aaCUGCU--CCGGuUCGA----------UCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 147241 0.7 0.577463
Target:  5'- -gGuCGGGGCCGAGgaGGaaGAGGCa -3'
miRNA:   3'- aaCuGCUCCGGUUCgaUCggCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 146176 0.68 0.659134
Target:  5'- -gGAuCGGuGGUCAGGC-AGCCcGGGCCg -3'
miRNA:   3'- aaCU-GCU-CCGGUUCGaUCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 146069 0.66 0.777517
Target:  5'- -cGGCcaGAGGCCAGGUcAGUCcGGGCg -3'
miRNA:   3'- aaCUG--CUCCGGUUCGaUCGGcUCCGg -5'
5628 5' -58.1 NC_001806.1 + 145643 0.66 0.804803
Target:  5'- gUGGCGGGuGCCGGGggA-CCGGGGUg -3'
miRNA:   3'- aACUGCUC-CGGUUCgaUcGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 143110 0.68 0.659134
Target:  5'- -cGACGcuggGGGCguGGCU-GCCGggagGGGCCg -3'
miRNA:   3'- aaCUGC----UCCGguUCGAuCGGC----UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 139234 0.69 0.627426
Target:  5'- -cGACGGccaacguGGCCGAGUuacUGGaaGAGGCCc -3'
miRNA:   3'- aaCUGCU-------CCGGUUCG---AUCggCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 138421 0.66 0.768149
Target:  5'- --uGCGAGGUgCAcagcaaacagcAGCUGGUCGuGGCCc -3'
miRNA:   3'- aacUGCUCCG-GU-----------UCGAUCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 137736 0.72 0.440265
Target:  5'- -cGACGAGGCCGGGCUccuuGGgCGucaccuccucacGGCCg -3'
miRNA:   3'- aaCUGCUCCGGUUCGA----UCgGCu-----------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 136966 0.66 0.813597
Target:  5'- -aGugGGGGCCcgcGAGCguggugcggucaUGGCgGcGGCCg -3'
miRNA:   3'- aaCugCUCCGG---UUCG------------AUCGgCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 135969 0.69 0.62845
Target:  5'- -cGcACGAGGCgCGAGgcGGCCGAcccGGCCu -3'
miRNA:   3'- aaC-UGCUCCG-GUUCgaUCGGCU---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.