miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5630 3' -66.3 NC_001806.1 + 51105 0.66 0.492111
Target:  5'- gGGGCCgccgcccugCGGGCgCACgugucggggaGGCGCgCGACCggGCUg -3'
miRNA:   3'- -UCCGG---------GCCCG-GUG----------CCGCG-GCUGG--UGG- -5'
5630 3' -66.3 NC_001806.1 + 31302 0.66 0.492111
Target:  5'- uGGUCCGGGgaGCagggGGCGUCGACC-Cg -3'
miRNA:   3'- uCCGGGCCCggUG----CCGCGGCUGGuGg -5'
5630 3' -66.3 NC_001806.1 + 84220 0.66 0.492111
Target:  5'- uGGGCCCucugauGGCCACcGUGCUGAaacaCgGCCg -3'
miRNA:   3'- -UCCGGGc-----CCGGUGcCGCGGCU----GgUGG- -5'
5630 3' -66.3 NC_001806.1 + 81929 0.66 0.492111
Target:  5'- cGGCCUcGGCCcCGuaCGCCucccggGACCGCCg -3'
miRNA:   3'- uCCGGGcCCGGuGCc-GCGG------CUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 146853 0.66 0.492111
Target:  5'- -aGCCgGGGaCCGCGGCccgcaGCCGgguCGCCa -3'
miRNA:   3'- ucCGGgCCC-GGUGCCG-----CGGCug-GUGG- -5'
5630 3' -66.3 NC_001806.1 + 124213 0.66 0.492111
Target:  5'- uGGUCgGGGagugcguuCUAC-GCGCCGGCCGCa -3'
miRNA:   3'- uCCGGgCCC--------GGUGcCGCGGCUGGUGg -5'
5630 3' -66.3 NC_001806.1 + 70070 0.66 0.492111
Target:  5'- uGGGCCCGGGacuUugGGC-UgGGCUAUCu -3'
miRNA:   3'- -UCCGGGCCCg--GugCCGcGgCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 34008 0.66 0.492111
Target:  5'- gGGGCgUGGGCgGgGGUGCucguCGAUCgACCg -3'
miRNA:   3'- -UCCGgGCCCGgUgCCGCG----GCUGG-UGG- -5'
5630 3' -66.3 NC_001806.1 + 13615 0.66 0.491222
Target:  5'- cGGGUCCGGuaggcccGCCugGaugugguacacGCGCCgGACCcCCg -3'
miRNA:   3'- -UCCGGGCC-------CGGugC-----------CGCGG-CUGGuGG- -5'
5630 3' -66.3 NC_001806.1 + 80115 0.66 0.483256
Target:  5'- cGGCCCcuguuuuaGGCCGCaacccGGCcgaGCCGACCucauCCu -3'
miRNA:   3'- uCCGGGc-------CCGGUG-----CCG---CGGCUGGu---GG- -5'
5630 3' -66.3 NC_001806.1 + 106242 0.66 0.483256
Target:  5'- --uCCCGGGCCugGGUaacguuuucgGCCGuCCcugACCc -3'
miRNA:   3'- uccGGGCCCGGugCCG----------CGGCuGG---UGG- -5'
5630 3' -66.3 NC_001806.1 + 127045 0.66 0.483256
Target:  5'- uGGGCCUcucguucuccgGGGCC-CGGCccuGCUG-CUGCCg -3'
miRNA:   3'- -UCCGGG-----------CCCGGuGCCG---CGGCuGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 73245 0.66 0.483256
Target:  5'- gAGGCCCacccaaacguGGccGCCACGGCGguuaaguucaCCGcgugcuCCGCCg -3'
miRNA:   3'- -UCCGGG----------CC--CGGUGCCGC----------GGCu-----GGUGG- -5'
5630 3' -66.3 NC_001806.1 + 25867 0.66 0.483256
Target:  5'- -aGCCCGGGCCccccGCgGGCGCgCGcGCgCGCa -3'
miRNA:   3'- ucCGGGCCCGG----UG-CCGCG-GC-UG-GUGg -5'
5630 3' -66.3 NC_001806.1 + 128528 0.66 0.483256
Target:  5'- uGGCCaugCGGGCCGCaGCcagaCGGCgGCCc -3'
miRNA:   3'- uCCGG---GCCCGGUGcCGcg--GCUGgUGG- -5'
5630 3' -66.3 NC_001806.1 + 118737 0.66 0.483256
Target:  5'- gAGuGCCUGgcGGCCGCGGgaaucccCUGGCCGCCc -3'
miRNA:   3'- -UC-CGGGC--CCGGUGCCgc-----GGCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 74493 0.66 0.483256
Target:  5'- cGGGUCUGGccgaGCUGCGGCGCuuCGAC-GCCc -3'
miRNA:   3'- -UCCGGGCC----CGGUGCCGCG--GCUGgUGG- -5'
5630 3' -66.3 NC_001806.1 + 73303 0.66 0.483256
Target:  5'- uGGCCCGcgaGGUCGCcGCGUguucgCGGCuCACCa -3'
miRNA:   3'- uCCGGGC---CCGGUGcCGCG-----GCUG-GUGG- -5'
5630 3' -66.3 NC_001806.1 + 80009 0.66 0.483256
Target:  5'- aGGGUUcccguaggCGGGCCgcaGCGGCGCCuuACgCGCCc -3'
miRNA:   3'- -UCCGG--------GCCCGG---UGCCGCGGc-UG-GUGG- -5'
5630 3' -66.3 NC_001806.1 + 39567 0.66 0.483256
Target:  5'- uGGCCgGGGCCACcaucuugugGGCGggacucaCGA-CGCCa -3'
miRNA:   3'- uCCGGgCCCGGUG---------CCGCg------GCUgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.