miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5639 5' -60.8 NC_001806.1 + 123186 0.66 0.741982
Target:  5'- uAUCAGA-GCACCC--CCCGGGuCGCCc -3'
miRNA:   3'- -UGGUCUgCGUGGGcuGGGCCUcGUGG- -5'
5639 5' -60.8 NC_001806.1 + 92355 0.66 0.741982
Target:  5'- gGCCAGACgGCcCCCG--CCGaGAGCAgCu -3'
miRNA:   3'- -UGGUCUG-CGuGGGCugGGC-CUCGUgG- -5'
5639 5' -60.8 NC_001806.1 + 78598 0.66 0.741982
Target:  5'- gGCCAGcACGUcgCCGugCCGGc-CGCCg -3'
miRNA:   3'- -UGGUC-UGCGugGGCugGGCCucGUGG- -5'
5639 5' -60.8 NC_001806.1 + 147426 0.66 0.741982
Target:  5'- gGCCcGAccCGCGCCUcuuCCuCGGAcGCACCg -3'
miRNA:   3'- -UGGuCU--GCGUGGGcu-GG-GCCU-CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 99971 0.66 0.741982
Target:  5'- cCCGcgcGGCGCGCCuCGAgccucCCCGGGGUAgUa -3'
miRNA:   3'- uGGU---CUGCGUGG-GCU-----GGGCCUCGUgG- -5'
5639 5' -60.8 NC_001806.1 + 1412 0.66 0.741982
Target:  5'- gGCCcGugGCcgagGCCCagcgaauCCCGGgcGGCGCCg -3'
miRNA:   3'- -UGGuCugCG----UGGGcu-----GGGCC--UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 40172 0.66 0.741982
Target:  5'- cGCCGuGGCGCgACUCG-CCCGGccgugcuuaaAGCGCa -3'
miRNA:   3'- -UGGU-CUGCG-UGGGCuGGGCC----------UCGUGg -5'
5639 5' -60.8 NC_001806.1 + 128544 0.66 0.741982
Target:  5'- aGCCAGACgGCgGCCCGcguCCaGGGCGCg -3'
miRNA:   3'- -UGGUCUG-CG-UGGGCug-GGcCUCGUGg -5'
5639 5' -60.8 NC_001806.1 + 60473 0.66 0.741046
Target:  5'- aACCAGGCccccucuGC-CgCCGGCcgCCGGcGGCACCg -3'
miRNA:   3'- -UGGUCUG-------CGuG-GGCUG--GGCC-UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 106777 0.66 0.739173
Target:  5'- cGCUGGACGCcUCCGccgcgugggcggcuACCCGGAggaggGCACg -3'
miRNA:   3'- -UGGUCUGCGuGGGC--------------UGGGCCU-----CGUGg -5'
5639 5' -60.8 NC_001806.1 + 143408 0.66 0.739173
Target:  5'- gGCCGGGuCGCggcucuuacgagcgGCCCGGCCCGcGcuccCACCc -3'
miRNA:   3'- -UGGUCU-GCG--------------UGGGCUGGGC-Cuc--GUGG- -5'
5639 5' -60.8 NC_001806.1 + 88387 0.66 0.732591
Target:  5'- gGCUAG-CGUguuguUCCGGCCCGGuuugagacGGUACCa -3'
miRNA:   3'- -UGGUCuGCGu----GGGCUGGGCC--------UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 113141 0.66 0.732591
Target:  5'- cGCCuggGGGCaGCGCCUGGCCCacGGGCGgguCCg -3'
miRNA:   3'- -UGG---UCUG-CGUGGGCUGGGc-CUCGU---GG- -5'
5639 5' -60.8 NC_001806.1 + 144817 0.66 0.732591
Target:  5'- gACgAGGgGCcCCCGACCgCGGcGguCCg -3'
miRNA:   3'- -UGgUCUgCGuGGGCUGG-GCCuCguGG- -5'
5639 5' -60.8 NC_001806.1 + 123299 0.66 0.732591
Target:  5'- gACCAGACccuGCAgCUGcACCgGGAGgGCg -3'
miRNA:   3'- -UGGUCUG---CGUgGGC-UGGgCCUCgUGg -5'
5639 5' -60.8 NC_001806.1 + 10861 0.66 0.732591
Target:  5'- gUCGGGcCGCGCCCcguaGGCCCcGGAGCu-- -3'
miRNA:   3'- uGGUCU-GCGUGGG----CUGGG-CCUCGugg -5'
5639 5' -60.8 NC_001806.1 + 102839 0.66 0.732591
Target:  5'- aGCCGGuCGCcCCgCGGCCCGcGuaCACCa -3'
miRNA:   3'- -UGGUCuGCGuGG-GCUGGGC-CucGUGG- -5'
5639 5' -60.8 NC_001806.1 + 41391 0.66 0.732591
Target:  5'- gGCCcuGGGCGCggAUgCGAUCCGuGAGcCGCCu -3'
miRNA:   3'- -UGG--UCUGCG--UGgGCUGGGC-CUC-GUGG- -5'
5639 5' -60.8 NC_001806.1 + 22867 0.66 0.732591
Target:  5'- gACCuGGCGg--CCGuCCCGGGGCugGCCg -3'
miRNA:   3'- -UGGuCUGCgugGGCuGGGCCUCG--UGG- -5'
5639 5' -60.8 NC_001806.1 + 127278 0.66 0.732591
Target:  5'- cCCGGAgGCGCCUGcCCCGc--CACCc -3'
miRNA:   3'- uGGUCUgCGUGGGCuGGGCcucGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.