miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5640 3' -55.1 NC_001806.1 + 78319 0.66 0.943054
Target:  5'- uGGCGCucGGUccccgagcugGGAACcGAGCGcGGCGCc -3'
miRNA:   3'- uCUGCG--CCA----------UUUUGuCUCGCcCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 29081 0.66 0.943054
Target:  5'- cGGACaCGGaacuguucGAGACGGGGCugcuGGGGcCGCa -3'
miRNA:   3'- -UCUGcGCCa-------UUUUGUCUCG----CCCC-GCG- -5'
5640 3' -55.1 NC_001806.1 + 26234 0.66 0.943054
Target:  5'- -cGCGCGGcccuuUAAAGCGGuGGCGGcGG-GCa -3'
miRNA:   3'- ucUGCGCC-----AUUUUGUC-UCGCC-CCgCG- -5'
5640 3' -55.1 NC_001806.1 + 22156 0.66 0.940277
Target:  5'- cGACGcCGGUucGAGGCcucGGGCGccccggcggccguguGGGCGCc -3'
miRNA:   3'- uCUGC-GCCA--UUUUGu--CUCGC---------------CCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 20713 0.66 0.938378
Target:  5'- cGGgGUGGgcccgccGGgGGGGCGGGGgGCc -3'
miRNA:   3'- uCUgCGCCauu----UUgUCUCGCCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 130198 0.66 0.937898
Target:  5'- gGGGCGCuGUGAcgcgucggcaugcGACacgucgcuGGGGCGGGGguCGCg -3'
miRNA:   3'- -UCUGCGcCAUU-------------UUG--------UCUCGCCCC--GCG- -5'
5640 3' -55.1 NC_001806.1 + 142148 0.66 0.937414
Target:  5'- uGugGCGGcgucccgucGCGGGGUGGGGUc- -3'
miRNA:   3'- uCugCGCCauuu-----UGUCUCGCCCCGcg -5'
5640 3' -55.1 NC_001806.1 + 25334 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 25986 0.66 0.933463
Target:  5'- aGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 25130 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 26154 0.66 0.933463
Target:  5'- aGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 25266 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 25164 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 26130 0.66 0.933463
Target:  5'- aGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 25300 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 26058 0.66 0.933463
Target:  5'- aGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 25096 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 26010 0.66 0.933463
Target:  5'- aGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 25368 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 25232 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.