Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 66826 | 0.66 | 0.91023 |
Target: 5'- cCGGcCCGGGUGGCCG-GU-GUGCGCc -3' miRNA: 3'- aGCUuGGUCUGCCGGCgCAgUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 95469 | 0.66 | 0.91023 |
Target: 5'- aUCGccACgCAaGCGGCCGCGgaCGUGCGg -3' miRNA: 3'- -AGCu-UG-GUcUGCCGGCGCa-GUACGCg -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 9014 | 0.66 | 0.91023 |
Target: 5'- gCGGACCAc-CGGCC-CuUUAUGCGCc -3' miRNA: 3'- aGCUUGGUcuGCCGGcGcAGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 148699 | 0.66 | 0.91023 |
Target: 5'- gUCGAGCgcaGGugGGgCGCGaucUCAUccGUGCa -3' miRNA: 3'- -AGCUUGg--UCugCCgGCGC---AGUA--CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 134694 | 0.66 | 0.91023 |
Target: 5'- gCGAuaACUGGACuGGCCGCaG-CA-GCGCu -3' miRNA: 3'- aGCU--UGGUCUG-CCGGCG-CaGUaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 62828 | 0.66 | 0.909634 |
Target: 5'- cCGAgaucugcGCCgAGGCGGCgGUGggCAUcaGCGCg -3' miRNA: 3'- aGCU-------UGG-UCUGCCGgCGCa-GUA--CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 77131 | 0.66 | 0.909634 |
Target: 5'- gCGGGCCGG--GGCCGUGgaggagcUCGggggGCGCg -3' miRNA: 3'- aGCUUGGUCugCCGGCGC-------AGUa---CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 99472 | 0.66 | 0.907833 |
Target: 5'- aCGAACaaaucggCGGcGCgGGCCGUGUCAacguccacgugugcUGCGCu -3' miRNA: 3'- aGCUUG-------GUC-UG-CCGGCGCAGU--------------ACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 21560 | 0.66 | 0.904169 |
Target: 5'- cCGGACCccACGGaCCGCcuGUCGccGCGCc -3' miRNA: 3'- aGCUUGGucUGCC-GGCG--CAGUa-CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 49945 | 0.66 | 0.904169 |
Target: 5'- aUGAGCUuuuuGGCGGauGcCGUCGUGCGg -3' miRNA: 3'- aGCUUGGu---CUGCCggC-GCAGUACGCg -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 110231 | 0.66 | 0.904169 |
Target: 5'- cCGAACCGGACacaGGCaacccCGaCGUGCGUu -3' miRNA: 3'- aGCUUGGUCUG---CCGgc---GCaGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 3830 | 0.66 | 0.904169 |
Target: 5'- cCGAAgCGGcCGGCCGC--CAUGgCGUa -3' miRNA: 3'- aGCUUgGUCuGCCGGCGcaGUAC-GCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 22202 | 0.66 | 0.904169 |
Target: 5'- cCGAGCUGGGCGacGCCGCGcagCAguaCGCc -3' miRNA: 3'- aGCUUGGUCUGC--CGGCGCa--GUac-GCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 50098 | 0.66 | 0.897881 |
Target: 5'- -gGGGCC--GCGGCCGUGcCGUuacugaGCGCg -3' miRNA: 3'- agCUUGGucUGCCGGCGCaGUA------CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 121406 | 0.66 | 0.897881 |
Target: 5'- -gGAGCCGGGCGcguGCUGCGcCuUGgGCc -3' miRNA: 3'- agCUUGGUCUGC---CGGCGCaGuACgCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 42956 | 0.66 | 0.897881 |
Target: 5'- uUCGAACCugucuugcuccGugGGCC-CGUCggcacggccaucGUGCGUg -3' miRNA: 3'- -AGCUUGGu----------CugCCGGcGCAG------------UACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 24371 | 0.66 | 0.897881 |
Target: 5'- gCGcGCguGGaGGCCGCG-CAcGCGCg -3' miRNA: 3'- aGCuUGguCUgCCGGCGCaGUaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 52573 | 0.66 | 0.897881 |
Target: 5'- aCGAcaugGCCAG-CGGCC-CGggggggCAUcGCGCg -3' miRNA: 3'- aGCU----UGGUCuGCCGGcGCa-----GUA-CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 70406 | 0.66 | 0.891368 |
Target: 5'- aUCGuGCUgcuGCGGCUGCa-CAUGCGCa -3' miRNA: 3'- -AGCuUGGuc-UGCCGGCGcaGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 29847 | 0.66 | 0.891368 |
Target: 5'- ----cCCAGcCGGCCGCGgcUCGgacaGCGCc -3' miRNA: 3'- agcuuGGUCuGCCGGCGC--AGUa---CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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