miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 66826 0.66 0.91023
Target:  5'- cCGGcCCGGGUGGCCG-GU-GUGCGCc -3'
miRNA:   3'- aGCUuGGUCUGCCGGCgCAgUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 95469 0.66 0.91023
Target:  5'- aUCGccACgCAaGCGGCCGCGgaCGUGCGg -3'
miRNA:   3'- -AGCu-UG-GUcUGCCGGCGCa-GUACGCg -5'
5649 3' -56.6 NC_001806.1 + 9014 0.66 0.91023
Target:  5'- gCGGACCAc-CGGCC-CuUUAUGCGCc -3'
miRNA:   3'- aGCUUGGUcuGCCGGcGcAGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 148699 0.66 0.91023
Target:  5'- gUCGAGCgcaGGugGGgCGCGaucUCAUccGUGCa -3'
miRNA:   3'- -AGCUUGg--UCugCCgGCGC---AGUA--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 134694 0.66 0.91023
Target:  5'- gCGAuaACUGGACuGGCCGCaG-CA-GCGCu -3'
miRNA:   3'- aGCU--UGGUCUG-CCGGCG-CaGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 62828 0.66 0.909634
Target:  5'- cCGAgaucugcGCCgAGGCGGCgGUGggCAUcaGCGCg -3'
miRNA:   3'- aGCU-------UGG-UCUGCCGgCGCa-GUA--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 77131 0.66 0.909634
Target:  5'- gCGGGCCGG--GGCCGUGgaggagcUCGggggGCGCg -3'
miRNA:   3'- aGCUUGGUCugCCGGCGC-------AGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 99472 0.66 0.907833
Target:  5'- aCGAACaaaucggCGGcGCgGGCCGUGUCAacguccacgugugcUGCGCu -3'
miRNA:   3'- aGCUUG-------GUC-UG-CCGGCGCAGU--------------ACGCG- -5'
5649 3' -56.6 NC_001806.1 + 21560 0.66 0.904169
Target:  5'- cCGGACCccACGGaCCGCcuGUCGccGCGCc -3'
miRNA:   3'- aGCUUGGucUGCC-GGCG--CAGUa-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 49945 0.66 0.904169
Target:  5'- aUGAGCUuuuuGGCGGauGcCGUCGUGCGg -3'
miRNA:   3'- aGCUUGGu---CUGCCggC-GCAGUACGCg -5'
5649 3' -56.6 NC_001806.1 + 110231 0.66 0.904169
Target:  5'- cCGAACCGGACacaGGCaacccCGaCGUGCGUu -3'
miRNA:   3'- aGCUUGGUCUG---CCGgc---GCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 3830 0.66 0.904169
Target:  5'- cCGAAgCGGcCGGCCGC--CAUGgCGUa -3'
miRNA:   3'- aGCUUgGUCuGCCGGCGcaGUAC-GCG- -5'
5649 3' -56.6 NC_001806.1 + 22202 0.66 0.904169
Target:  5'- cCGAGCUGGGCGacGCCGCGcagCAguaCGCc -3'
miRNA:   3'- aGCUUGGUCUGC--CGGCGCa--GUac-GCG- -5'
5649 3' -56.6 NC_001806.1 + 50098 0.66 0.897881
Target:  5'- -gGGGCC--GCGGCCGUGcCGUuacugaGCGCg -3'
miRNA:   3'- agCUUGGucUGCCGGCGCaGUA------CGCG- -5'
5649 3' -56.6 NC_001806.1 + 121406 0.66 0.897881
Target:  5'- -gGAGCCGGGCGcguGCUGCGcCuUGgGCc -3'
miRNA:   3'- agCUUGGUCUGC---CGGCGCaGuACgCG- -5'
5649 3' -56.6 NC_001806.1 + 42956 0.66 0.897881
Target:  5'- uUCGAACCugucuugcuccGugGGCC-CGUCggcacggccaucGUGCGUg -3'
miRNA:   3'- -AGCUUGGu----------CugCCGGcGCAG------------UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 24371 0.66 0.897881
Target:  5'- gCGcGCguGGaGGCCGCG-CAcGCGCg -3'
miRNA:   3'- aGCuUGguCUgCCGGCGCaGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 52573 0.66 0.897881
Target:  5'- aCGAcaugGCCAG-CGGCC-CGggggggCAUcGCGCg -3'
miRNA:   3'- aGCU----UGGUCuGCCGGcGCa-----GUA-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 70406 0.66 0.891368
Target:  5'- aUCGuGCUgcuGCGGCUGCa-CAUGCGCa -3'
miRNA:   3'- -AGCuUGGuc-UGCCGGCGcaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 29847 0.66 0.891368
Target:  5'- ----cCCAGcCGGCCGCGgcUCGgacaGCGCc -3'
miRNA:   3'- agcuuGGUCuGCCGGCGC--AGUa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.