miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 3' -51.8 NC_001806.1 + 152005 0.66 0.982263
Target:  5'- ---cCCGCUCCCGc-GGCcccGCCCCc -3'
miRNA:   3'- uuuaGGUGGGGGUuuCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 150706 0.76 0.590831
Target:  5'- ---cCCGCCCCC-GAGGCGGcccGCCCUg -3'
miRNA:   3'- uuuaGGUGGGGGuUUCCGUUu--UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 150623 0.7 0.881339
Target:  5'- ---cCCGCCCaau-GGGCcGGGCCCCg -3'
miRNA:   3'- uuuaGGUGGGgguuUCCGuUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 150173 0.67 0.959151
Target:  5'- ---cCgGCCCCCGAuuuggGGGCccAACCCg -3'
miRNA:   3'- uuuaGgUGGGGGUU-----UCCGuuUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 150078 0.66 0.981633
Target:  5'- ---gCCGCgcgUCCCAgggGAGGCAGgcccaccgcggggcGGCCCCg -3'
miRNA:   3'- uuuaGGUG---GGGGU---UUCCGUU--------------UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 149741 0.66 0.986056
Target:  5'- ---cCCAauauggcgcCCCCCAAuauGGC---GCCCCa -3'
miRNA:   3'- uuuaGGU---------GGGGGUUu--CCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 149623 0.67 0.962816
Target:  5'- --uUCCacGCCCCCuaacauGGC---GCCCCa -3'
miRNA:   3'- uuuAGG--UGGGGGuuu---CCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 149519 0.75 0.644043
Target:  5'- ---gCgACCCCCAAcaGGGCG--ACCCCg -3'
miRNA:   3'- uuuaGgUGGGGGUU--UCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 149356 0.73 0.758456
Target:  5'- ----aCGCCCCCAAcacGGCG--ACCCCg -3'
miRNA:   3'- uuuagGUGGGGGUUu--CCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 149258 0.68 0.946235
Target:  5'- gGGGUCCcacggcguCCCCCAAauauggcGGGCGGcuccuCCCCa -3'
miRNA:   3'- -UUUAGGu-------GGGGGUU-------UCCGUUuu---GGGG- -5'
5664 3' -51.8 NC_001806.1 + 148844 0.68 0.951092
Target:  5'- -cAUCCACgCCCugcGGCcccagcAGCCCCg -3'
miRNA:   3'- uuUAGGUGgGGGuuuCCGuu----UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 147973 0.71 0.850164
Target:  5'- ---aCC-CCCCCGGAGGggcCAGAcGCCCCc -3'
miRNA:   3'- uuuaGGuGGGGGUUUCC---GUUU-UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 147918 0.69 0.908683
Target:  5'- -cGUCCGgCCCCuc-GGCc--GCCCCg -3'
miRNA:   3'- uuUAGGUgGGGGuuuCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 147676 0.75 0.664257
Target:  5'- --cUCCGCCCCgggggccggggcgCGGGGGCG-GGCCCCg -3'
miRNA:   3'- uuuAGGUGGGG-------------GUUUCCGUuUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 147202 0.66 0.986056
Target:  5'- gGAcgCgGCCCCgGcggcggaaGAGGCG--GCCCCc -3'
miRNA:   3'- -UUuaGgUGGGGgU--------UUCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 147152 0.69 0.926523
Target:  5'- --cUCC-CUCCC-AGGGCAccgacGGCCCCg -3'
miRNA:   3'- uuuAGGuGGGGGuUUCCGUu----UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 146935 0.68 0.95484
Target:  5'- --cUCCAUgUCCAGgaugggcAGGCAGucCCCCg -3'
miRNA:   3'- uuuAGGUGgGGGUU-------UCCGUUuuGGGG- -5'
5664 3' -51.8 NC_001806.1 + 145977 0.69 0.914888
Target:  5'- ---gCCgACCCCCuuuuGGGC---GCCCCg -3'
miRNA:   3'- uuuaGG-UGGGGGuu--UCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 145142 0.68 0.939117
Target:  5'- --uUCCuCCCCCGuuaucccacucgucgAGGGC---GCCCCg -3'
miRNA:   3'- uuuAGGuGGGGGU---------------UUCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 144957 0.69 0.931952
Target:  5'- ---cCgGCCCCCGu-GGCGgcccggcccgGGGCCCCg -3'
miRNA:   3'- uuuaGgUGGGGGUuuCCGU----------UUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.