miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 144190 0.66 0.511981
Target:  5'- gCCGCCGCaGCCg-CCgcagCCGCCgCCGa -3'
miRNA:   3'- gGGUGGUGgCGGagGGa---GGCGGgGGU- -5'
5665 3' -65.8 NC_001806.1 + 68761 0.66 0.511981
Target:  5'- aCCACCccggcguacaGCCuGCuCUUCC-CCGCCCCg- -3'
miRNA:   3'- gGGUGG----------UGG-CG-GAGGGaGGCGGGGgu -5'
5665 3' -65.8 NC_001806.1 + 85294 0.66 0.511981
Target:  5'- aCCGCCACaaCGCCcCCCUCCaggaCCUCUu -3'
miRNA:   3'- gGGUGGUG--GCGGaGGGAGGc---GGGGGu -5'
5665 3' -65.8 NC_001806.1 + 140936 0.66 0.511981
Target:  5'- -aCGgCGCUgugGCCUCCCguUCCggGCCCCCGu -3'
miRNA:   3'- ggGUgGUGG---CGGAGGG--AGG--CGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 133741 0.66 0.511981
Target:  5'- aCCCGCgGCC-CCUUgugCUCC-CCCCCGu -3'
miRNA:   3'- -GGGUGgUGGcGGAGg--GAGGcGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 143166 0.66 0.511981
Target:  5'- uCCCGCCcCCcCC-CCC-CC-CCCCCGa -3'
miRNA:   3'- -GGGUGGuGGcGGaGGGaGGcGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 136638 0.66 0.511981
Target:  5'- gCCACCccggcgauauCCGCCUCCCgggCGUUCCUg -3'
miRNA:   3'- gGGUGGu---------GGCGGAGGGag-GCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 96893 0.66 0.511981
Target:  5'- uUCgGCCACCGCuaCUCCCaguuuauggggaUCuuugaggaccgCGCCCCCGu -3'
miRNA:   3'- -GGgUGGUGGCG--GAGGG------------AG-----------GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 107767 0.66 0.509262
Target:  5'- aCCCAUCACCcacaacgcagcuacGUCgucacccacucCCCUCUGCCCCgGg -3'
miRNA:   3'- -GGGUGGUGG--------------CGGa----------GGGAGGCGGGGgU- -5'
5665 3' -65.8 NC_001806.1 + 43667 0.66 0.506549
Target:  5'- gUgGCCAUCGCCgaacgggcccuuggCCuCUCCGCCUUCGg -3'
miRNA:   3'- gGgUGGUGGCGGa-------------GG-GAGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 118117 0.66 0.502942
Target:  5'- gUCGUCGCCgGUCUCCCUggCCugGCCCCCGa -3'
miRNA:   3'- gGGUGGUGG-CGGAGGGA--GG--CGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 4326 0.66 0.502942
Target:  5'- gCCgGCCACCGCCgcgcgggCCCggCgGCgCUCGa -3'
miRNA:   3'- -GGgUGGUGGCGGa------GGGa-GgCGgGGGU- -5'
5665 3' -65.8 NC_001806.1 + 26428 0.66 0.502942
Target:  5'- gCCCACgGgCGCCgUCCCaaCCGCacaguCCCAg -3'
miRNA:   3'- -GGGUGgUgGCGG-AGGGa-GGCGg----GGGU- -5'
5665 3' -65.8 NC_001806.1 + 14724 0.66 0.502942
Target:  5'- -aUACCACCGCCUuuauuguucuugCUUUCCGCaugugggcucuCCCCAu -3'
miRNA:   3'- ggGUGGUGGCGGA------------GGGAGGCG-----------GGGGU- -5'
5665 3' -65.8 NC_001806.1 + 118927 0.66 0.502942
Target:  5'- gCCgGCaCACCcugGCCUCCUUCCGCgUgCGu -3'
miRNA:   3'- -GGgUG-GUGG---CGGAGGGAGGCGgGgGU- -5'
5665 3' -65.8 NC_001806.1 + 150101 0.66 0.494867
Target:  5'- gCCCACCGcggggcggccCCGUC-CCCggggaccaacccggCGCCCCCAa -3'
miRNA:   3'- -GGGUGGU----------GGCGGaGGGag------------GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 87117 0.66 0.494867
Target:  5'- uCCUugC-CCGCCUCCaggugcgccacugcgUCgGCCCUCAg -3'
miRNA:   3'- -GGGugGuGGCGGAGGg--------------AGgCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 30441 0.66 0.493973
Target:  5'- -gCACgGgC-CCUCCCgcggcgCCGCCCCCu -3'
miRNA:   3'- ggGUGgUgGcGGAGGGa-----GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 3185 0.66 0.493973
Target:  5'- gCCACgGCgGCCUCgCUgCCGCCggCCAc -3'
miRNA:   3'- gGGUGgUGgCGGAGgGA-GGCGGg-GGU- -5'
5665 3' -65.8 NC_001806.1 + 144315 0.66 0.485965
Target:  5'- cCCCcCCcCCGCCcguguggguauccggCCCcCCGCCCCg- -3'
miRNA:   3'- -GGGuGGuGGCGGa--------------GGGaGGCGGGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.