miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 5' -55.2 NC_001806.1 + 100300 0.66 0.940673
Target:  5'- aCGCGGAauGCGGCUGggGuuGG-GGCGc -3'
miRNA:   3'- -GCGUCUc-CGCCGGCuuCuuCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 29439 0.66 0.940673
Target:  5'- cCGCAu-GGaGGCCGAGGAGGccgucagGGCGg -3'
miRNA:   3'- -GCGUcuCCgCCGGCUUCUUCua-----CUGC- -5'
5665 5' -55.2 NC_001806.1 + 71525 0.66 0.940673
Target:  5'- uGguGugcGGGCGGgCGggGggGGggGugGa -3'
miRNA:   3'- gCguC---UCCGCCgGCuuCuuCUa-CugC- -5'
5665 5' -55.2 NC_001806.1 + 110219 0.66 0.940673
Target:  5'- aCGCGGuGGgGGCCGAAccGGAcacaGGCa -3'
miRNA:   3'- -GCGUCuCCgCCGGCUUcuUCUa---CUGc -5'
5665 5' -55.2 NC_001806.1 + 120192 0.66 0.940673
Target:  5'- aCGCGc--GUGGuuGggGGAGGUGACc -3'
miRNA:   3'- -GCGUcucCGCCggCuuCUUCUACUGc -5'
5665 5' -55.2 NC_001806.1 + 50504 0.66 0.940673
Target:  5'- cCGCGGucguGGgGGCCGAGcacGAGGcgcugGGCGa -3'
miRNA:   3'- -GCGUCu---CCgCCGGCUU---CUUCua---CUGC- -5'
5665 5' -55.2 NC_001806.1 + 28857 0.66 0.935884
Target:  5'- gGCGGGGGgGGgaGAGGggGAacucGugGg -3'
miRNA:   3'- gCGUCUCCgCCggCUUCuuCUa---CugC- -5'
5665 5' -55.2 NC_001806.1 + 151601 0.66 0.935884
Target:  5'- aGaCAGAGaGCGuGCCGggGugguAGAguuUGACa -3'
miRNA:   3'- gC-GUCUC-CGC-CGGCuuCu---UCU---ACUGc -5'
5665 5' -55.2 NC_001806.1 + 147045 0.66 0.930341
Target:  5'- cCGCGGGGaCGGCCccGGAAGucuccgcGUGGCGc -3'
miRNA:   3'- -GCGUCUCcGCCGGcuUCUUC-------UACUGC- -5'
5665 5' -55.2 NC_001806.1 + 101046 0.66 0.92559
Target:  5'- uCGCAGcgcuGGCGGCCGucucGAGGAc-GCGc -3'
miRNA:   3'- -GCGUCu---CCGCCGGCuu--CUUCUacUGC- -5'
5665 5' -55.2 NC_001806.1 + 76067 0.66 0.92559
Target:  5'- gGCGGGGG-GGCUGcuGGAGcgGGCc -3'
miRNA:   3'- gCGUCUCCgCCGGCuuCUUCuaCUGc -5'
5665 5' -55.2 NC_001806.1 + 105100 0.66 0.92559
Target:  5'- uGCAG-GGCGGCgGGucguggcgGGAGGAUugggGACa -3'
miRNA:   3'- gCGUCuCCGCCGgCU--------UCUUCUA----CUGc -5'
5665 5' -55.2 NC_001806.1 + 123209 0.66 0.92559
Target:  5'- cCGCAG-GGUGGCgGAauGGAccgAGAUGcCGc -3'
miRNA:   3'- -GCGUCuCCGCCGgCU--UCU---UCUACuGC- -5'
5665 5' -55.2 NC_001806.1 + 122462 0.66 0.92559
Target:  5'- aGCAc-GGCGGCCaGAAaGuAGGUGGCGu -3'
miRNA:   3'- gCGUcuCCGCCGG-CUU-CuUCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 25537 0.66 0.92505
Target:  5'- gGCuGGGGCcggggagggcuggGGCCGggGAGGGcuggGGCc -3'
miRNA:   3'- gCGuCUCCG-------------CCGGCuuCUUCUa---CUGc -5'
5665 5' -55.2 NC_001806.1 + 25585 0.66 0.92505
Target:  5'- gGCuGGGGCcggggagggcuggGGCCGggGAGGGcuggGGCc -3'
miRNA:   3'- gCGuCUCCG-------------CCGGCuuCUUCUa---CUGc -5'
5665 5' -55.2 NC_001806.1 + 147205 0.66 0.920082
Target:  5'- nGCGGccccGGCGGCgGAAGAGGcgGcCc -3'
miRNA:   3'- gCGUCu---CCGCCGgCUUCUUCuaCuGc -5'
5665 5' -55.2 NC_001806.1 + 3305 0.66 0.920082
Target:  5'- uGCGGcGGCGG-CGggGAAGcgGGg- -3'
miRNA:   3'- gCGUCuCCGCCgGCuuCUUCuaCUgc -5'
5665 5' -55.2 NC_001806.1 + 98839 0.66 0.920082
Target:  5'- aCGCGuccGGGGaGGgCGAGGAGGgcGGCGa -3'
miRNA:   3'- -GCGU---CUCCgCCgGCUUCUUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 142163 0.66 0.920082
Target:  5'- uCGCGGGGuGgGGuCCGAcguGgcGAUGAUGg -3'
miRNA:   3'- -GCGUCUC-CgCC-GGCUu--CuuCUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.