miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5666 3' -55.1 NC_001806.1 + 106532 0.66 0.930363
Target:  5'- gCUGGugcucGGGUGCGAUGCCgCGCugguGCGCGCg -3'
miRNA:   3'- -GACC-----UCUGUGUUACGGgGCG----UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 133032 0.66 0.930363
Target:  5'- cCUGGucccGGACACGugcaacgccUGCCCUGCGCuGCGg -3'
miRNA:   3'- -GACC----UCUGUGUu--------ACGGGGCGUG-UGUg -5'
5666 3' -55.1 NC_001806.1 + 84067 0.66 0.930363
Target:  5'- uCUGG-GAguCGggGCCCCaGCuGCGCGCu -3'
miRNA:   3'- -GACCuCUguGUuaCGGGG-CG-UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 36997 0.66 0.929838
Target:  5'- -gGGGGGCgACGAUGUgacuggccgucaaCUCGCAgACACg -3'
miRNA:   3'- gaCCUCUG-UGUUACG-------------GGGCGUgUGUG- -5'
5666 3' -55.1 NC_001806.1 + 112379 0.66 0.929838
Target:  5'- -cGGccACGCAgcccuccguggccGUGCCCCGuCugACGCa -3'
miRNA:   3'- gaCCucUGUGU-------------UACGGGGC-GugUGUG- -5'
5666 3' -55.1 NC_001806.1 + 46483 0.66 0.924999
Target:  5'- uCUGG-GACAUGucGCgUCCGCGCACAg -3'
miRNA:   3'- -GACCuCUGUGUuaCG-GGGCGUGUGUg -5'
5666 3' -55.1 NC_001806.1 + 65474 0.66 0.924999
Target:  5'- cCUGGGGGC-----GCCCgCGCAC-CACg -3'
miRNA:   3'- -GACCUCUGuguuaCGGG-GCGUGuGUG- -5'
5666 3' -55.1 NC_001806.1 + 82691 0.66 0.924999
Target:  5'- uUGGcGGCgaGCAGcucGCCgUGCACACACg -3'
miRNA:   3'- gACCuCUG--UGUUa--CGGgGCGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 89056 0.66 0.921662
Target:  5'- uUGGGGGCGCGcuugaggugaccgucGUGCaCCCcgGCGCGCu- -3'
miRNA:   3'- gACCUCUGUGU---------------UACG-GGG--CGUGUGug -5'
5666 3' -55.1 NC_001806.1 + 76355 0.66 0.919389
Target:  5'- -aGGGGuCACccUGCCCUGCccgagcgaggACGCGCu -3'
miRNA:   3'- gaCCUCuGUGuuACGGGGCG----------UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 33373 0.66 0.919389
Target:  5'- -cGGAGAgcCGcgGCaCCCGgACGCGCc -3'
miRNA:   3'- gaCCUCUguGUuaCG-GGGCgUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 60023 0.66 0.919389
Target:  5'- -cGGAGcCGCGcUGCCguCCGC-CGCGCc -3'
miRNA:   3'- gaCCUCuGUGUuACGG--GGCGuGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 96341 0.66 0.917658
Target:  5'- -gGGGGGCACGAcggGCCCCcguagucccgccauGCGCcaggGCGCc -3'
miRNA:   3'- gaCCUCUGUGUUa--CGGGG--------------CGUG----UGUG- -5'
5666 3' -55.1 NC_001806.1 + 141488 0.66 0.913532
Target:  5'- gUGG-GACGCcgccGCCCCGCGCuugACg -3'
miRNA:   3'- gACCuCUGUGuua-CGGGGCGUGug-UG- -5'
5666 3' -55.1 NC_001806.1 + 140244 0.66 0.913532
Target:  5'- -gGGAGAUuCAAcugaGCCCCGCccuggaAUACGCa -3'
miRNA:   3'- gaCCUCUGuGUUa---CGGGGCG------UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 29533 0.66 0.907432
Target:  5'- -gGGGGGCACAcggugaggGCCCUGuCGCcCACc -3'
miRNA:   3'- gaCCUCUGUGUua------CGGGGC-GUGuGUG- -5'
5666 3' -55.1 NC_001806.1 + 115915 0.66 0.907432
Target:  5'- uCUGGGcccGACAgAccuCCCCGCGCAUGCu -3'
miRNA:   3'- -GACCU---CUGUgUuacGGGGCGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 135293 0.66 0.907432
Target:  5'- -aGGGGGCgacgaaugcgGCGAUcGCCCCGCugGagUACg -3'
miRNA:   3'- gaCCUCUG----------UGUUA-CGGGGCGugU--GUG- -5'
5666 3' -55.1 NC_001806.1 + 71339 0.66 0.907432
Target:  5'- -cGGAGGCcuauggGCAcgGCCCaCGC-CAgGCg -3'
miRNA:   3'- gaCCUCUG------UGUuaCGGG-GCGuGUgUG- -5'
5666 3' -55.1 NC_001806.1 + 63293 0.66 0.907432
Target:  5'- cCUGGAGACGCAucggGCCagauuCACGCu -3'
miRNA:   3'- -GACCUCUGUGUua--CGGggcguGUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.