miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5675 3' -58.2 NC_001806.1 + 151394 0.66 0.814014
Target:  5'- cGUGGAGCCACUgGCgCagcaGCAGCgAAc -3'
miRNA:   3'- -CGCCUUGGUGGgUGgGg---UGUCGgUUu -5'
5675 3' -58.2 NC_001806.1 + 100136 0.66 0.814014
Target:  5'- nGCGGcuauGGCC-CCCACCaaCGCGGCUAu- -3'
miRNA:   3'- -CGCC----UUGGuGGGUGGg-GUGUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 20473 0.66 0.814014
Target:  5'- uCGGGGCCcgggcCCCGCCCC-CuGCCc-- -3'
miRNA:   3'- cGCCUUGGu----GGGUGGGGuGuCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 77452 0.66 0.814014
Target:  5'- cCGGG--CGUCCGCCCCACccGGCCAAGa -3'
miRNA:   3'- cGCCUugGUGGGUGGGGUG--UCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 91889 0.66 0.814014
Target:  5'- cGUGG-ACCAggCGguCCCCACGGCCAu- -3'
miRNA:   3'- -CGCCuUGGUggGU--GGGGUGUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 46120 0.66 0.813146
Target:  5'- cGCGGGcgccuccGCCACCCGCUggguCCGgaggGGCCGGAc -3'
miRNA:   3'- -CGCCU-------UGGUGGGUGG----GGUg---UCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 141487 0.66 0.813146
Target:  5'- aGUGGGacGCCG-CCGCCCCGCgcuugacGGUCAGGg -3'
miRNA:   3'- -CGCCU--UGGUgGGUGGGGUG-------UCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 132931 0.66 0.805265
Target:  5'- aGCGG-GCUGgCgGacCCCCACGGCCGGAc -3'
miRNA:   3'- -CGCCuUGGUgGgU--GGGGUGUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 2219 0.66 0.805265
Target:  5'- gGCGG--CCGuguCCgGCCCgCACAGCCGGu -3'
miRNA:   3'- -CGCCuuGGU---GGgUGGG-GUGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 1937 0.66 0.805265
Target:  5'- uGCGGcGCagguCCCGCgCCGcCGGCCAGc -3'
miRNA:   3'- -CGCCuUGgu--GGGUGgGGU-GUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 8065 0.66 0.805265
Target:  5'- -gGGGACCcgGCCCuaACCCCACcccuguGCUAGGg -3'
miRNA:   3'- cgCCUUGG--UGGG--UGGGGUGu-----CGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 147356 0.66 0.805265
Target:  5'- uGCGucGCCGCCCucuugGCCCCugcCGGCgCGAGg -3'
miRNA:   3'- -CGCcuUGGUGGG-----UGGGGu--GUCG-GUUU- -5'
5675 3' -58.2 NC_001806.1 + 116574 0.66 0.80261
Target:  5'- cCGGGACCugaACCCcaGCCCCagaaaccccggaggGCuGCCAGAc -3'
miRNA:   3'- cGCCUUGG---UGGG--UGGGG--------------UGuCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 52772 0.66 0.796361
Target:  5'- cGCcGAGCCcCCCGCugcggCCaCACAGCCGGc -3'
miRNA:   3'- -CGcCUUGGuGGGUG-----GG-GUGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 114194 0.66 0.796361
Target:  5'- aCGGAccCCGCgCACCCCcugcaccCGGCCAAu -3'
miRNA:   3'- cGCCUu-GGUGgGUGGGGu------GUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 27460 0.66 0.796361
Target:  5'- gGCGGccccGGCCGCCCuuCCCGCuuCCGGc -3'
miRNA:   3'- -CGCC----UUGGUGGGugGGGUGucGGUUu -5'
5675 3' -58.2 NC_001806.1 + 57602 0.66 0.796361
Target:  5'- gGCGGccGCCAaggcCCCGCCCCGuCAGgggaauCCAAAa -3'
miRNA:   3'- -CGCCu-UGGU----GGGUGGGGU-GUC------GGUUU- -5'
5675 3' -58.2 NC_001806.1 + 124771 0.66 0.796361
Target:  5'- aGCGGuuGACCugU-ACgCCCugGGCCAGAc -3'
miRNA:   3'- -CGCC--UUGGugGgUG-GGGugUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 4466 0.66 0.796361
Target:  5'- cCGGcGCCGcgcucgacggacCCCGCCCgACGGCCc-- -3'
miRNA:   3'- cGCCuUGGU------------GGGUGGGgUGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 91125 0.66 0.795463
Target:  5'- --cGAGCCGCCCACCgacaucuCCGCguGGCCGc- -3'
miRNA:   3'- cgcCUUGGUGGGUGG-------GGUG--UCGGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.