miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 3' -57.9 NC_001806.1 + 148762 0.66 0.846424
Target:  5'- cCCCCGUCCUcUCgAGGGGGGgcgCCc--- -3'
miRNA:   3'- -GGGGCGGGGcAG-UCCCCUUa--GGuuuu -5'
5695 3' -57.9 NC_001806.1 + 50876 0.66 0.846424
Target:  5'- cCCCCGCCaaGUUcuGGGcGGAcUCCGc-- -3'
miRNA:   3'- -GGGGCGGggCAG--UCC-CCUuAGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 104141 0.66 0.846424
Target:  5'- aCCCCGCCCagCGUCuugucauuGGcGAAUUCGAAc -3'
miRNA:   3'- -GGGGCGGG--GCAGu-------CCcCUUAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 12621 0.66 0.846424
Target:  5'- cCCCCGCaCCCauuaAGGGGGgguAUCUAGu- -3'
miRNA:   3'- -GGGGCG-GGGcag-UCCCCU---UAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 30946 0.66 0.838419
Target:  5'- aCCUGCCCaucUCGGGGGucUCUAGc- -3'
miRNA:   3'- gGGGCGGGgc-AGUCCCCuuAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 5526 0.66 0.838419
Target:  5'- cCCCCGCCCCccCGGcGGGcccaccCCGAAc -3'
miRNA:   3'- -GGGGCGGGGcaGUC-CCCuua---GGUUUu -5'
5695 3' -57.9 NC_001806.1 + 22072 0.66 0.838419
Target:  5'- cCCCCGCCCC--CGGGGcGggUgCu--- -3'
miRNA:   3'- -GGGGCGGGGcaGUCCC-CuuAgGuuuu -5'
5695 3' -57.9 NC_001806.1 + 1239 0.66 0.821867
Target:  5'- gCCCCGCCCCGUCccGGc---CCGu-- -3'
miRNA:   3'- -GGGGCGGGGCAGucCCcuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 30727 0.66 0.821867
Target:  5'- gCCCCGacCCCCG-CGGGGGccgCCu--- -3'
miRNA:   3'- -GGGGC--GGGGCaGUCCCCuuaGGuuuu -5'
5695 3' -57.9 NC_001806.1 + 50485 0.66 0.819325
Target:  5'- gCCCUGCCCCugggaagccccgcgGUCGuGGGGg--CCGAGc -3'
miRNA:   3'- -GGGGCGGGG--------------CAGU-CCCCuuaGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 56266 0.66 0.816768
Target:  5'- gCCCCGuCCCCGggguccuuccugugCAGGcGAcgCCGGAGc -3'
miRNA:   3'- -GGGGC-GGGGCa-------------GUCCcCUuaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 83943 0.66 0.813335
Target:  5'- aCUCgCGCCgCCGcUCGcaacGGGGAAUUCGAGAc -3'
miRNA:   3'- -GGG-GCGG-GGC-AGU----CCCCUUAGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 82444 0.67 0.804643
Target:  5'- uCCCCGCCCCGcaacgUAGauGGGAcgauaagCCGAAu -3'
miRNA:   3'- -GGGGCGGGGCa----GUC--CCCUua-----GGUUUu -5'
5695 3' -57.9 NC_001806.1 + 67572 0.67 0.799353
Target:  5'- gCCCUGUCCCGcgguaucgcguguugUgGGGGGGAguUCCAc-- -3'
miRNA:   3'- -GGGGCGGGGC---------------AgUCCCCUU--AGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 39819 0.67 0.795797
Target:  5'- gCCaGcCCCCGUUGGGGGggUgcgucggggcccCCAGAAa -3'
miRNA:   3'- gGGgC-GGGGCAGUCCCCuuA------------GGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 148144 0.67 0.786807
Target:  5'- gCCCCG-CCCGUCacGGGGGGcgCg---- -3'
miRNA:   3'- -GGGGCgGGGCAG--UCCCCUuaGguuuu -5'
5695 3' -57.9 NC_001806.1 + 4792 0.67 0.777681
Target:  5'- uCCCCGUCaucguCGUCGGcucgaaaggcGGGggUCCGGGg -3'
miRNA:   3'- -GGGGCGGg----GCAGUC----------CCCuuAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 142155 0.67 0.777681
Target:  5'- --gCGUCCCGUCgcgGGGuGGggUCCGAc- -3'
miRNA:   3'- gggGCGGGGCAG---UCC-CCuuAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 37909 0.67 0.768428
Target:  5'- gCCaCGCCUCGcCAuGGGGGcgCCGGGg -3'
miRNA:   3'- gGG-GCGGGGCaGU-CCCCUuaGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 96539 0.67 0.768428
Target:  5'- gCCCGCCCCuggCGcccccccaacGGGGGAcCCGAAAc -3'
miRNA:   3'- gGGGCGGGGca-GU----------CCCCUUaGGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.