miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 128275 0.68 0.836721
Target:  5'- gUC-AGCaCGGCGCgagCCgGGCCGACGACGc -3'
miRNA:   3'- -AGcUCG-GUUGCG---GGaCUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 127082 0.7 0.727709
Target:  5'- cCGAaaCAACGUCCUcaucACCGACGACGg -3'
miRNA:   3'- aGCUcgGUUGCGGGAc---UGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 126084 0.69 0.81227
Target:  5'- aCGAGCCGACgGCCCgaaGCCugcuguuucgcuacuGCGugGg -3'
miRNA:   3'- aGCUCGGUUG-CGGGac-UGGu--------------UGCugC- -5'
5703 3' -55.9 NC_001806.1 + 125300 0.68 0.820012
Target:  5'- gCGucCCuGgGCCCUGGCCGAgGACa -3'
miRNA:   3'- aGCucGGuUgCGGGACUGGUUgCUGc -5'
5703 3' -55.9 NC_001806.1 + 124965 0.67 0.882235
Target:  5'- cCGAGaCCAacacccACGgCCUGGCguAUGACGu -3'
miRNA:   3'- aGCUC-GGU------UGCgGGACUGguUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 123515 0.67 0.867884
Target:  5'- cUCGAuCCGGCGCuuggugagcgCCUGgacGCCGugGACGa -3'
miRNA:   3'- -AGCUcGGUUGCG----------GGAC---UGGUugCUGC- -5'
5703 3' -55.9 NC_001806.1 + 123251 0.69 0.80263
Target:  5'- cUGcGCCGACG-CCUGGCCGA-GACGc -3'
miRNA:   3'- aGCuCGGUUGCgGGACUGGUUgCUGC- -5'
5703 3' -55.9 NC_001806.1 + 121927 0.67 0.867884
Target:  5'- cCGGGCCGuUGCCCgGGCCuccucaAGCGAUc -3'
miRNA:   3'- aGCUCGGUuGCGGGaCUGG------UUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 120945 0.66 0.914219
Target:  5'- -aGAGUCGACGaCCUgggGACgGACGuCGa -3'
miRNA:   3'- agCUCGGUUGC-GGGa--CUGgUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 119905 0.67 0.860392
Target:  5'- gCGcuGGCCAcgGCCCUGACCGA-GGCc -3'
miRNA:   3'- aGC--UCGGUugCGGGACUGGUUgCUGc -5'
5703 3' -55.9 NC_001806.1 + 119717 0.75 0.460419
Target:  5'- gUCGAGUgguuggaucgCGGaugggaaGCCCUGGCCGGCGGCGa -3'
miRNA:   3'- -AGCUCG----------GUUg------CGGGACUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 118830 0.66 0.925391
Target:  5'- cUCGGGCUcAUGCC---ACCGGCGACu -3'
miRNA:   3'- -AGCUCGGuUGCGGgacUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 118640 0.67 0.860392
Target:  5'- cCGAaCCAugaacGCGCaCUUGGCCAACGAgGu -3'
miRNA:   3'- aGCUcGGU-----UGCG-GGACUGGUUGCUgC- -5'
5703 3' -55.9 NC_001806.1 + 116937 0.72 0.644523
Target:  5'- gCGGGCCAACuaggagacaccuugGCCCUGGCUccCGugGu -3'
miRNA:   3'- aGCUCGGUUG--------------CGGGACUGGuuGCugC- -5'
5703 3' -55.9 NC_001806.1 + 116133 0.69 0.78464
Target:  5'- cUCGGGCaucucGCGCCCcGAUgCGGCGGCGc -3'
miRNA:   3'- -AGCUCGgu---UGCGGGaCUG-GUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 115522 0.68 0.852696
Target:  5'- aCG-GCCAcCGCC---GCCAGCGACGu -3'
miRNA:   3'- aGCuCGGUuGCGGgacUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 115114 0.66 0.902111
Target:  5'- uUCGGGU--GCGCCCagGugCcGCGGCGc -3'
miRNA:   3'- -AGCUCGguUGCGGGa-CugGuUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 113986 0.7 0.727709
Target:  5'- cCGAGCCGcggACGCCgcggaUGACCGGCcGCa -3'
miRNA:   3'- aGCUCGGU---UGCGGg----ACUGGUUGcUGc -5'
5703 3' -55.9 NC_001806.1 + 113827 0.67 0.882235
Target:  5'- gUGGGaCUguGACGCCCUGAU--GCGGCGc -3'
miRNA:   3'- aGCUC-GG--UUGCGGGACUGguUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 113530 0.71 0.677944
Target:  5'- gCGAGCaCGucuucuGCGCCCUGGCCcggcuCGugGu -3'
miRNA:   3'- aGCUCG-GU------UGCGGGACUGGuu---GCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.