miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 5' -68.1 NC_001806.1 + 137815 0.67 0.310964
Target:  5'- --aCCCCCCaguaCGcGGCC-CGCCuGcGGCCCg -3'
miRNA:   3'- aaaGGGGGG----GC-CCGGcGUGG-C-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 136948 0.66 0.374822
Target:  5'- --gUCCCCCCGcGCaCGCGUaguggGGGCCCg -3'
miRNA:   3'- aaaGGGGGGGCcCG-GCGUGg----CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 135219 0.66 0.367304
Target:  5'- -cUCCuCCCCCaGGauGaCAUCGGaGCCCg -3'
miRNA:   3'- aaAGG-GGGGGcCCggC-GUGGCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 135066 0.75 0.092884
Target:  5'- --gCCCCgCgGGGaCGCGCCGGGCCg -3'
miRNA:   3'- aaaGGGGgGgCCCgGCGUGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 132995 0.66 0.35041
Target:  5'- -cUCCCucagagCCCUGGGCCggggccgucuuggaGCGCCuGGUCCc -3'
miRNA:   3'- aaAGGG------GGGGCCCGG--------------CGUGGcCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 132836 0.74 0.104968
Target:  5'- --aCCCgCCCGcGGCCGU--CGGGCCCg -3'
miRNA:   3'- aaaGGGgGGGC-CCGGCGugGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 132503 0.67 0.345379
Target:  5'- --gCCgCCCCCGGGgcccuggcccCCGUcuuuGCCuuucugGGGCCCg -3'
miRNA:   3'- aaaGG-GGGGGCCC----------GGCG----UGG------CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 131561 0.74 0.102438
Target:  5'- --cCCCCCCCGucaccGGuuuCCGCgacccACCGGGCCCg -3'
miRNA:   3'- aaaGGGGGGGC-----CC---GGCG-----UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 130077 0.66 0.382443
Target:  5'- -----gCUCCGGGgCGCGCuCGGaGCCCg -3'
miRNA:   3'- aaagggGGGGCCCgGCGUG-GCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 129864 0.66 0.397992
Target:  5'- --cCCCCCUCGGGgaCGUgACCacgugGGGCCa -3'
miRNA:   3'- aaaGGGGGGGCCCg-GCG-UGG-----CCCGGg -5'
5704 5' -68.1 NC_001806.1 + 129667 0.74 0.102438
Target:  5'- --gCCCgCCCGGGCCGCcgaGcGGCCCg -3'
miRNA:   3'- aaaGGGgGGGCCCGGCGuggC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 129591 0.66 0.374822
Target:  5'- --gCCaUgCCCGGGUuuucggCGCGCCGGuGCCUg -3'
miRNA:   3'- aaaGG-GgGGGCCCG------GCGUGGCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 126484 0.69 0.255724
Target:  5'- cUUCgCgCCCGGGCgCGUcCCcGGCCCg -3'
miRNA:   3'- aAAGgGgGGGCCCG-GCGuGGcCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 126320 0.66 0.382443
Target:  5'- ---aCCCCCCuGGCCuuuuacgagGUcaaauGCCGGGCCa -3'
miRNA:   3'- aaagGGGGGGcCCGG---------CG-----UGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 125501 0.66 0.390167
Target:  5'- -----gCCCCGGGCCGCgucGCCGGcacuuucugacGCCUc -3'
miRNA:   3'- aaagggGGGGCCCGGCG---UGGCC-----------CGGG- -5'
5704 5' -68.1 NC_001806.1 + 123809 0.68 0.297947
Target:  5'- -cUCCUCCCaCGGGucCCGcCACCGauccGGCCUc -3'
miRNA:   3'- aaAGGGGGG-GCCC--GGC-GUGGC----CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 123195 0.68 0.267263
Target:  5'- ---aCCCCCCGGGUCGC-CCgcaGGGUg- -3'
miRNA:   3'- aaagGGGGGGCCCGGCGuGG---CCCGgg -5'
5704 5' -68.1 NC_001806.1 + 122159 0.66 0.387839
Target:  5'- gUUUCCCCuuuaacgugguccaCUCGGGCCGaACCGaaccaGCCCc -3'
miRNA:   3'- -AAAGGGG--------------GGGCCCGGCgUGGCc----CGGG- -5'
5704 5' -68.1 NC_001806.1 + 121914 0.77 0.067185
Target:  5'- --gCCCCaccguugCCCGGGCCGUugcCCGGGCCUc -3'
miRNA:   3'- aaaGGGG-------GGGCCCGGCGu--GGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 121398 0.8 0.037807
Target:  5'- --aCCCCCCCGGagccgggcgcguGCUGCGCCuuGGGCCCg -3'
miRNA:   3'- aaaGGGGGGGCC------------CGGCGUGG--CCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.