miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5707 3' -59.4 NC_001806.1 + 133027 0.66 0.747496
Target:  5'- gAGCGCCuggucccgGACACgugcaacgccugcccUGCGCUGCGGCa--- -3'
miRNA:   3'- -UCGUGG--------CUGUG---------------GCGUGACGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 69199 0.66 0.732966
Target:  5'- cGGCACUGGCagucuuccagccuGCCGUcuccagccuGCUGCaGCUCGGg -3'
miRNA:   3'- -UCGUGGCUG-------------UGGCG---------UGACGcCGAGUU- -5'
5707 3' -59.4 NC_001806.1 + 78346 0.66 0.724152
Target:  5'- gAGCG-CGGCGCCGCGCUGgGaaaGCUgAGu -3'
miRNA:   3'- -UCGUgGCUGUGGCGUGACgC---CGAgUU- -5'
5707 3' -59.4 NC_001806.1 + 150662 0.66 0.724152
Target:  5'- uGGUugGCCGGgcccCGCCGCGCUgGCGGC-CGc -3'
miRNA:   3'- -UCG--UGGCU----GUGGCGUGA-CGCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 67040 0.66 0.724152
Target:  5'- gGGC-CCG-UACCGCAUcgGCGGCgUCGc -3'
miRNA:   3'- -UCGuGGCuGUGGCGUGa-CGCCG-AGUu -5'
5707 3' -59.4 NC_001806.1 + 103151 0.66 0.724152
Target:  5'- gGGCAgCGGCAgCCGCugUGC-GCUgGg -3'
miRNA:   3'- -UCGUgGCUGU-GGCGugACGcCGAgUu -5'
5707 3' -59.4 NC_001806.1 + 21908 0.66 0.714285
Target:  5'- gAGCGCCGccggGC-CCGCGCgGCGGUg--- -3'
miRNA:   3'- -UCGUGGC----UGuGGCGUGaCGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 69259 0.66 0.714285
Target:  5'- -cCGCCGGCGCCcaGCagcgGCUGCuGGCUCu- -3'
miRNA:   3'- ucGUGGCUGUGG--CG----UGACG-CCGAGuu -5'
5707 3' -59.4 NC_001806.1 + 112415 0.66 0.714285
Target:  5'- cGCauGCCGACA-CGCGCggGCGGCcggUCGAc -3'
miRNA:   3'- uCG--UGGCUGUgGCGUGa-CGCCG---AGUU- -5'
5707 3' -59.4 NC_001806.1 + 61816 0.66 0.714285
Target:  5'- uGGUACCGGC-CaCGUACUcGCGGCg--- -3'
miRNA:   3'- -UCGUGGCUGuG-GCGUGA-CGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 23837 0.66 0.704348
Target:  5'- gGGC-CCGcuGCGCCGCAUgGCGGCc--- -3'
miRNA:   3'- -UCGuGGC--UGUGGCGUGaCGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 74630 0.66 0.704348
Target:  5'- cGCaugGCCGAgGaaGCGCUGCGGCa--- -3'
miRNA:   3'- uCG---UGGCUgUggCGUGACGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 121600 0.66 0.704348
Target:  5'- -aCAUCGAuucCGCCaacGCACUGUGGCUCu- -3'
miRNA:   3'- ucGUGGCU---GUGG---CGUGACGCCGAGuu -5'
5707 3' -59.4 NC_001806.1 + 4460 0.67 0.698357
Target:  5'- gGGCuGCCGGCGCCGCGCUcgacggaccccgcccGaCGGCcCGc -3'
miRNA:   3'- -UCG-UGGCUGUGGCGUGA---------------C-GCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 24525 0.67 0.694351
Target:  5'- cGGCGCUGGacgGCCGgGCgGCGGcCUCGGg -3'
miRNA:   3'- -UCGUGGCUg--UGGCgUGaCGCC-GAGUU- -5'
5707 3' -59.4 NC_001806.1 + 19070 0.67 0.694351
Target:  5'- cGCACCGAgCGCCguaGCAUUGCauuugGGCUUGGg -3'
miRNA:   3'- uCGUGGCU-GUGG---CGUGACG-----CCGAGUU- -5'
5707 3' -59.4 NC_001806.1 + 100482 0.67 0.684303
Target:  5'- gGGCACCGGuCACC---CUGCGGCgcggCAGc -3'
miRNA:   3'- -UCGUGGCU-GUGGcguGACGCCGa---GUU- -5'
5707 3' -59.4 NC_001806.1 + 6233 0.67 0.684303
Target:  5'- cGGCGUCGGCAUCGCgACgcccCGGCUCGGg -3'
miRNA:   3'- -UCGUGGCUGUGGCG-UGac--GCCGAGUU- -5'
5707 3' -59.4 NC_001806.1 + 119188 0.67 0.671178
Target:  5'- uGGCGCCGccGCcCCGCcggccgcgaaggagGCUGCGGCcCAc -3'
miRNA:   3'- -UCGUGGC--UGuGGCG--------------UGACGCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 3667 0.67 0.664088
Target:  5'- uGCGCCGGCGCCGgGgCUccccGCGGCccccgUCAGc -3'
miRNA:   3'- uCGUGGCUGUGGCgU-GA----CGCCG-----AGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.