miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 21548 0.66 0.800161
Target:  5'- cGCGGCGcgUAUCCGGA---CCCCaCGGa -3'
miRNA:   3'- -UGCUGCuuGUGGGCCUccaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 51024 0.66 0.800161
Target:  5'- aGCGGCGggUccguguuggGCCCGcGGGUCCgCgUGGu -3'
miRNA:   3'- -UGCUGCuuG---------UGGGCcUCCAGG-GgGCC- -5'
5709 5' -60.3 NC_001806.1 + 55727 0.66 0.800161
Target:  5'- cUGGCGGcugACCCGGGGGaCCCCgaugUGGg -3'
miRNA:   3'- uGCUGCUug-UGGGCCUCCaGGGG----GCC- -5'
5709 5' -60.3 NC_001806.1 + 5818 0.66 0.800161
Target:  5'- uACGAgcccCGcGCGCCCGuuGGccgUCCCCGGg -3'
miRNA:   3'- -UGCU----GCuUGUGGGCcuCCa--GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 85999 0.66 0.800161
Target:  5'- gGCGACGGcguCuCCCGGGGGcgCUUggCCGGg -3'
miRNA:   3'- -UGCUGCUu--GuGGGCCUCCa-GGG--GGCC- -5'
5709 5' -60.3 NC_001806.1 + 21790 0.66 0.800161
Target:  5'- cGCGGCGccGGCAgccCCCGGGcGGacgccgCCCCCGc -3'
miRNA:   3'- -UGCUGC--UUGU---GGGCCU-CCa-----GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 70466 0.66 0.795021
Target:  5'- aGCGACGGGCGCCgccuguaugCGGuGGUcggggacacgcccgaCCgCCUGGg -3'
miRNA:   3'- -UGCUGCUUGUGG---------GCCuCCA---------------GG-GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 67885 0.66 0.791569
Target:  5'- ---cCGcACAUCCGGAcaaUCCCCCGGg -3'
miRNA:   3'- ugcuGCuUGUGGGCCUcc-AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 29122 0.66 0.791569
Target:  5'- gGCGugGAugGgggggcgguCUCGGGGGggagCCCCCc- -3'
miRNA:   3'- -UGCugCUugU---------GGGCCUCCa---GGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 57984 0.66 0.791569
Target:  5'- -gGGC-AGCGCCaucGAGGUCUUCCGGa -3'
miRNA:   3'- ugCUGcUUGUGGgc-CUCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 56093 0.66 0.790702
Target:  5'- uAUGGCGAaaucaucACACaCCGGcGGUCUUCgGGa -3'
miRNA:   3'- -UGCUGCU-------UGUG-GGCCuCCAGGGGgCC- -5'
5709 5' -60.3 NC_001806.1 + 55786 0.66 0.78635
Target:  5'- cGCGGUGAucguGgGCCCGGuGGaggcaguuuccgagCCCCCGGa -3'
miRNA:   3'- -UGCUGCU----UgUGGGCCuCCa-------------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 88433 0.66 0.782846
Target:  5'- gUGACGA--ACCCGGGGuuGUCCaggaugaaCCGGg -3'
miRNA:   3'- uGCUGCUugUGGGCCUC--CAGGg-------GGCC- -5'
5709 5' -60.3 NC_001806.1 + 23772 0.66 0.782846
Target:  5'- gACGACGAuaaccccCACCCccacGGGG-CCgCCGGg -3'
miRNA:   3'- -UGCUGCUu------GUGGGc---CUCCaGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 23310 0.66 0.779322
Target:  5'- cCGGCccGGcCGCCCGGAGGcggcggcccgcgaCCCCCGa -3'
miRNA:   3'- uGCUG--CUuGUGGGCCUCCa------------GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 143942 0.66 0.777553
Target:  5'- uCGACGAGCACCCccgcccacgCCCCCGc -3'
miRNA:   3'- uGCUGCUUGUGGGccucca---GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 95903 0.66 0.774001
Target:  5'- aACGugGGgcuccugccGCACCUgaaGGAGGagcUCgCCCGGu -3'
miRNA:   3'- -UGCugCU---------UGUGGG---CCUCC---AGgGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 73756 0.66 0.774001
Target:  5'- uCGGCGAguggcuucuggaGCGCUCGcAGGcCCaCCCGGa -3'
miRNA:   3'- uGCUGCU------------UGUGGGCcUCCaGG-GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 29161 0.66 0.774001
Target:  5'- cGCGAgGAAgACCCcggcaguugcGGGGGcgCCCCCc- -3'
miRNA:   3'- -UGCUgCUUgUGGG----------CCUCCa-GGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 78993 0.66 0.774001
Target:  5'- uUGugGGAaaACCCGGAcc-CCCCCGGc -3'
miRNA:   3'- uGCugCUUg-UGGGCCUccaGGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.