miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 104349 0.66 0.852255
Target:  5'- -aGCGcGUAuGGCUuCGUACC-CCUGCCa -3'
miRNA:   3'- aaCGU-CGU-CUGAuGCAUGGcGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 147022 0.66 0.852255
Target:  5'- ---gGGCAGGuagcGCGUgagGCCGCCCGCg -3'
miRNA:   3'- aacgUCGUCUga--UGCA---UGGCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 2258 0.66 0.852255
Target:  5'- -cGcCAGCAGGC-AgG-ACaGCCCGCCg -3'
miRNA:   3'- aaC-GUCGUCUGaUgCaUGgCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 19117 0.66 0.852255
Target:  5'- -gGgGGCccgGGGCUGCGUuucccggguagACCGgaCCCGCCc -3'
miRNA:   3'- aaCgUCG---UCUGAUGCA-----------UGGC--GGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 21799 0.66 0.852255
Target:  5'- -gGCAGCccccGGGCggACGccGCC-CCCGCCc -3'
miRNA:   3'- aaCGUCG----UCUGa-UGCa-UGGcGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 24431 0.66 0.852255
Target:  5'- -cGCGGCGGcaACgUGCGcUACCGCgUGCg -3'
miRNA:   3'- aaCGUCGUC--UG-AUGC-AUGGCGgGCGg -5'
5732 5' -57.3 NC_001806.1 + 78147 0.66 0.852255
Target:  5'- -cGCAGCAGAUUccaugcuauuCGUGCagCGCCUGaCCc -3'
miRNA:   3'- aaCGUCGUCUGAu---------GCAUG--GCGGGC-GG- -5'
5732 5' -57.3 NC_001806.1 + 14823 0.66 0.852255
Target:  5'- -cGCuaGGguGugUGCGU--CGCCCGCg -3'
miRNA:   3'- aaCG--UCguCugAUGCAugGCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 73959 0.66 0.852255
Target:  5'- -aGCAcGcCGGGCcccucgGCGUAauGCCCGCCc -3'
miRNA:   3'- aaCGU-C-GUCUGa-----UGCAUggCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 72028 0.66 0.851467
Target:  5'- -cGCGGCGGACUGCGcUGugucuucUCGCgCGUa -3'
miRNA:   3'- aaCGUCGUCUGAUGC-AU-------GGCGgGCGg -5'
5732 5' -57.3 NC_001806.1 + 22632 0.66 0.844284
Target:  5'- -cGCAcCGGGCgagcGCGcGgUGCCCGCCg -3'
miRNA:   3'- aaCGUcGUCUGa---UGCaUgGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 45286 0.66 0.844284
Target:  5'- -gGCGGgAGACgcgggcccgcGCGgggaGCCGCCCGgCg -3'
miRNA:   3'- aaCGUCgUCUGa---------UGCa---UGGCGGGCgG- -5'
5732 5' -57.3 NC_001806.1 + 89522 0.66 0.844284
Target:  5'- -gGCGGCgAGcuGCUGCGcGgCGCCCcgGCCg -3'
miRNA:   3'- aaCGUCG-UC--UGAUGCaUgGCGGG--CGG- -5'
5732 5' -57.3 NC_001806.1 + 77870 0.66 0.844284
Target:  5'- aUGCGGCGGccgagcuCUACGUcGCC-CUCGUCg -3'
miRNA:   3'- aACGUCGUCu------GAUGCA-UGGcGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 147214 0.66 0.836119
Target:  5'- -gGCGGCGGAagagGCG-GCC-CCCGCg -3'
miRNA:   3'- aaCGUCGUCUga--UGCaUGGcGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 138482 0.66 0.836119
Target:  5'- --aCAGcCAGAUcGCGgugACCGCgCGCCu -3'
miRNA:   3'- aacGUC-GUCUGaUGCa--UGGCGgGCGG- -5'
5732 5' -57.3 NC_001806.1 + 25912 0.66 0.836119
Target:  5'- -gGCGGUccGGGCgGCGUGCgCGCgCGCg -3'
miRNA:   3'- aaCGUCG--UCUGaUGCAUG-GCGgGCGg -5'
5732 5' -57.3 NC_001806.1 + 69693 0.66 0.835292
Target:  5'- cUGCGGCGGGCgcuCGUgggggaguuugagACgGCCgagCGCCg -3'
miRNA:   3'- aACGUCGUCUGau-GCA-------------UGgCGG---GCGG- -5'
5732 5' -57.3 NC_001806.1 + 23501 0.66 0.827768
Target:  5'- -cGUGGCcGugU-CGcGCCgGCCCGCCg -3'
miRNA:   3'- aaCGUCGuCugAuGCaUGG-CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 57587 0.66 0.827768
Target:  5'- aUGguGCgAGAgUugGgcgGCCGCCaagGCCc -3'
miRNA:   3'- aACguCG-UCUgAugCa--UGGCGGg--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.