miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5745 3' -61.9 NC_001806.1 + 120329 0.66 0.654758
Target:  5'- gGGGCGGUCgGGGGC-GGcGGGUCgUCCc -3'
miRNA:   3'- gUCUGUCGG-UCCCGaCC-CUCGGgAGG- -5'
5745 3' -61.9 NC_001806.1 + 126875 0.66 0.654758
Target:  5'- aGGACGgcGCCGGGGCUcucGGGGCCg--- -3'
miRNA:   3'- gUCUGU--CGGUCCCGAc--CCUCGGgagg -5'
5745 3' -61.9 NC_001806.1 + 71331 0.66 0.654758
Target:  5'- aCAGA-AGCCGGaGGCcuaUGGGcacGGCCCacgCCa -3'
miRNA:   3'- -GUCUgUCGGUC-CCG---ACCC---UCGGGa--GG- -5'
5745 3' -61.9 NC_001806.1 + 150866 0.66 0.654758
Target:  5'- cCGGGCcggcuccgcgGGCCAGGGCccGGGcacGGgCCUCg -3'
miRNA:   3'- -GUCUG----------UCGGUCCCGa-CCC---UCgGGAGg -5'
5745 3' -61.9 NC_001806.1 + 147781 0.66 0.654758
Target:  5'- gCGGGgGGcCCGGGGCgGGGGGCggagCCu -3'
miRNA:   3'- -GUCUgUC-GGUCCCGaCCCUCGgga-GG- -5'
5745 3' -61.9 NC_001806.1 + 9716 0.66 0.644857
Target:  5'- gCAGACAGCagCAGGGC----GGCCC-CCa -3'
miRNA:   3'- -GUCUGUCG--GUCCCGacccUCGGGaGG- -5'
5745 3' -61.9 NC_001806.1 + 96487 0.66 0.644857
Target:  5'- gGGucGCGGCCgcgacccaGGcGGCgaacGGGGGCCCUgCCa -3'
miRNA:   3'- gUC--UGUCGG--------UC-CCGa---CCCUCGGGA-GG- -5'
5745 3' -61.9 NC_001806.1 + 2507 0.66 0.644857
Target:  5'- gCAcGCGGCCuGGGCggcgGGGgcgGGCCCggcgcaCCg -3'
miRNA:   3'- -GUcUGUCGGuCCCGa---CCC---UCGGGa-----GG- -5'
5745 3' -61.9 NC_001806.1 + 21965 0.66 0.638911
Target:  5'- cCGGGCAGCCccGGCgGGucGAGCuggacgccgacgcgaCCUCCg -3'
miRNA:   3'- -GUCUGUCGGucCCGaCC--CUCG---------------GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 38502 0.66 0.634946
Target:  5'- -cGGCuGCCgucGGGGCUGGGGugucggauauGgCCUCUg -3'
miRNA:   3'- guCUGuCGG---UCCCGACCCU----------CgGGAGG- -5'
5745 3' -61.9 NC_001806.1 + 52357 0.66 0.634946
Target:  5'- uGGACAGCCAGGaGCguuucugucGGAccaccGCCCcCCu -3'
miRNA:   3'- gUCUGUCGGUCC-CGac-------CCU-----CGGGaGG- -5'
5745 3' -61.9 NC_001806.1 + 84455 0.66 0.634946
Target:  5'- -uGugAGCCugcuucGGGCcGcGGGGCCCgaggCCa -3'
miRNA:   3'- guCugUCGGu-----CCCGaC-CCUCGGGa---GG- -5'
5745 3' -61.9 NC_001806.1 + 73991 0.66 0.625034
Target:  5'- ---cCGGCCGGGGCggccccgcaGGGGGCuCCgcgCCc -3'
miRNA:   3'- gucuGUCGGUCCCGa--------CCCUCG-GGa--GG- -5'
5745 3' -61.9 NC_001806.1 + 46092 0.66 0.625034
Target:  5'- gGGGCGGuuuuguccggcCCGGGGcCUGcGcGGGCgCCUCCg -3'
miRNA:   3'- gUCUGUC-----------GGUCCC-GAC-C-CUCG-GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 149770 0.66 0.624043
Target:  5'- cCAGACAuggcGCCcGGccccucaccucgcGCUGGGggcGGCCCUCa -3'
miRNA:   3'- -GUCUGU----CGGuCC-------------CGACCC---UCGGGAGg -5'
5745 3' -61.9 NC_001806.1 + 21182 0.66 0.615126
Target:  5'- cCAGACcGCgAcGaGCgGGGGGCCCUCg -3'
miRNA:   3'- -GUCUGuCGgUcC-CGaCCCUCGGGAGg -5'
5745 3' -61.9 NC_001806.1 + 43717 0.66 0.615126
Target:  5'- gGGAaccCGGUCGGGGgggaUUGGGGugaccgaggcGCCCUCCu -3'
miRNA:   3'- gUCU---GUCGGUCCC----GACCCU----------CGGGAGG- -5'
5745 3' -61.9 NC_001806.1 + 2624 0.66 0.615126
Target:  5'- gAGcuCGGCCAcGGCgcgcgGGGAGCaguaggCCUCCa -3'
miRNA:   3'- gUCu-GUCGGUcCCGa----CCCUCG------GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 2797 0.66 0.605231
Target:  5'- gGGGC-GCCGcGGGCUGGGcgggggcgGGCUCgggCCc -3'
miRNA:   3'- gUCUGuCGGU-CCCGACCC--------UCGGGa--GG- -5'
5745 3' -61.9 NC_001806.1 + 2756 0.66 0.605231
Target:  5'- --cACGGCCacGGGGCgcgGGcGGGCCUgcgCCg -3'
miRNA:   3'- gucUGUCGG--UCCCGa--CC-CUCGGGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.