miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5746 5' -53.7 NC_001806.1 + 151513 0.72 0.749528
Target:  5'- -aCCUggGACUgugcgguuGGGACGGCGCCCguggGCCc -3'
miRNA:   3'- gaGGAa-CUGG--------UCUUGUUGCGGGa---CGG- -5'
5746 5' -53.7 NC_001806.1 + 141417 0.7 0.814984
Target:  5'- -aCCa-GGCCGGGGCGGCGCgCgGCCa -3'
miRNA:   3'- gaGGaaCUGGUCUUGUUGCGgGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 139748 0.7 0.806076
Target:  5'- -gCCUcgcUGACCAGcGCAcUGCCCgacGCCg -3'
miRNA:   3'- gaGGA---ACUGGUCuUGUuGCGGGa--CGG- -5'
5746 5' -53.7 NC_001806.1 + 138653 0.66 0.960542
Target:  5'- uCUCCUUuuacaACUuucuGCAGCGCCCggGCCu -3'
miRNA:   3'- -GAGGAAc----UGGucu-UGUUGCGGGa-CGG- -5'
5746 5' -53.7 NC_001806.1 + 137589 0.69 0.886517
Target:  5'- cCUCCgggGGCgaggaguugCGGAACGaguuucGCGCCCUGgCCg -3'
miRNA:   3'- -GAGGaa-CUG---------GUCUUGU------UGCGGGAC-GG- -5'
5746 5' -53.7 NC_001806.1 + 134907 0.68 0.900008
Target:  5'- -gCCUcGACCAGGcugcgguccccgGCGAUGgCCUGCUu -3'
miRNA:   3'- gaGGAaCUGGUCU------------UGUUGCgGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 131460 0.66 0.95287
Target:  5'- gUCCgcgGACCG--GCGGCGCUgUUGCCg -3'
miRNA:   3'- gAGGaa-CUGGUcuUGUUGCGG-GACGG- -5'
5746 5' -53.7 NC_001806.1 + 131203 0.67 0.929506
Target:  5'- -gCCUgccgGACCcacaGGcAGCuguACGCCCUGCUu -3'
miRNA:   3'- gaGGAa---CUGG----UC-UUGu--UGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 130736 0.69 0.886517
Target:  5'- gUCCcgGagaGCUGGAGCucGugGCCCUGCCc -3'
miRNA:   3'- gAGGaaC---UGGUCUUG--UugCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 128027 0.69 0.886517
Target:  5'- gCUCgcaGGCCAGGccgACGAUGCCCguggcgGCCa -3'
miRNA:   3'- -GAGgaaCUGGUCU---UGUUGCGGGa-----CGG- -5'
5746 5' -53.7 NC_001806.1 + 121541 0.68 0.920165
Target:  5'- gCUCCU-GGCCAGGAUcaccaaccacccgGggggcugcgaguccuGCGCCCcGCCg -3'
miRNA:   3'- -GAGGAaCUGGUCUUG-------------U---------------UGCGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 119855 0.67 0.929506
Target:  5'- aCUCCgUGGCguGGggcggGCGACGCgCCcGCCc -3'
miRNA:   3'- -GAGGaACUGguCU-----UGUUGCG-GGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 115301 0.69 0.886517
Target:  5'- -aCCacGGCCAGAGCGACccguCCCggGCCu -3'
miRNA:   3'- gaGGaaCUGGUCUUGUUGc---GGGa-CGG- -5'
5746 5' -53.7 NC_001806.1 + 113132 0.66 0.964034
Target:  5'- gUUUUUGaacGCCugGGGGCAGCGCCUgGCCc -3'
miRNA:   3'- gAGGAAC---UGG--UCUUGUUGCGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 111765 0.67 0.948682
Target:  5'- -gCCUguacGACgCgAGuuCGACGCCCUGCUg -3'
miRNA:   3'- gaGGAa---CUG-G-UCuuGUUGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 105697 0.67 0.94825
Target:  5'- -cCCagGGCUcgcagccaacgucGGGGCGGCaaGCCCUGCCa -3'
miRNA:   3'- gaGGaaCUGG-------------UCUUGUUG--CGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 101479 0.68 0.918442
Target:  5'- -aCCgccgGGCCGGGACuggaGCCC-GCCg -3'
miRNA:   3'- gaGGaa--CUGGUCUUGuug-CGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 98719 0.66 0.967305
Target:  5'- gUCC-UGGCCGGccuGGCGGCGgCCUucuucGCCu -3'
miRNA:   3'- gAGGaACUGGUC---UUGUUGCgGGA-----CGG- -5'
5746 5' -53.7 NC_001806.1 + 98441 0.66 0.960542
Target:  5'- -gCCacgaGAUCaAGGACAGCGgCCUGCUg -3'
miRNA:   3'- gaGGaa--CUGG-UCUUGUUGCgGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 95762 0.74 0.616605
Target:  5'- uCUCCUgcgacACCAGGugGACccgGCCCUGCUc -3'
miRNA:   3'- -GAGGAac---UGGUCUugUUG---CGGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.