miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5748 3' -57.1 NC_001806.1 + 111201 0.66 0.898949
Target:  5'- cCCUGGGGAUaGCcUGCGcGG-CCGGGGc -3'
miRNA:   3'- -GGGCCUCUGcUGuACGU-CCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 62615 0.66 0.898949
Target:  5'- gCCGGAGGgGGUggGUGGGcUCCAGGc -3'
miRNA:   3'- gGGCCUCUgCUGuaCGUCC-AGGUCCu -5'
5748 3' -57.1 NC_001806.1 + 6689 0.66 0.89511
Target:  5'- cCCUGGAaauGGCgGACAccuuccuggacaccaUGCGGGUugggcCCAGGAc -3'
miRNA:   3'- -GGGCCU---CUG-CUGU---------------ACGUCCA-----GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 105140 0.66 0.892505
Target:  5'- uUCGGGGGCGGcCGUGCcGccCCAGGGu -3'
miRNA:   3'- gGGCCUCUGCU-GUACGuCcaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 91520 0.66 0.892505
Target:  5'- aCCUGGAGcgcuGCGACG-GCgccgugaucgucGGGcgCCAGGAg -3'
miRNA:   3'- -GGGCCUC----UGCUGUaCG------------UCCa-GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 132684 0.66 0.892505
Target:  5'- uCCUGGGGGCcuGGCccGCGGuGggggCCAGGGu -3'
miRNA:   3'- -GGGCCUCUG--CUGuaCGUC-Ca---GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 144811 0.66 0.888533
Target:  5'- gCCCGG-GACGAgGggcccccgaccgcgGC-GGUCCGGGc -3'
miRNA:   3'- -GGGCCuCUGCUgUa-------------CGuCCAGGUCCu -5'
5748 3' -57.1 NC_001806.1 + 6075 0.66 0.888533
Target:  5'- cCCCGGGGGCGggcccgggcgGCGggggGCGGGUCUcuccggcgcacauaaAGGc -3'
miRNA:   3'- -GGGCCUCUGC----------UGUa---CGUCCAGG---------------UCCu -5'
5748 3' -57.1 NC_001806.1 + 135400 0.66 0.885841
Target:  5'- uCCCaGAGgcGCGACAggcgcucCAGGUCCuGGGc -3'
miRNA:   3'- -GGGcCUC--UGCUGUac-----GUCCAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 100201 0.66 0.885841
Target:  5'- cCCCGGgauacugauGGGCGACGUGgggaGGGUaaugCUGGGAa -3'
miRNA:   3'- -GGGCC---------UCUGCUGUACg---UCCA----GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 103906 0.66 0.885841
Target:  5'- aCCGGAGACcuucUGCGGGacgagCCGGGu -3'
miRNA:   3'- gGGCCUCUGcuguACGUCCa----GGUCCu -5'
5748 3' -57.1 NC_001806.1 + 55424 0.66 0.87896
Target:  5'- aUCUGGAGGCGGaacucCAUGCGGGU---GGAa -3'
miRNA:   3'- -GGGCCUCUGCU-----GUACGUCCAgguCCU- -5'
5748 3' -57.1 NC_001806.1 + 24987 0.66 0.87896
Target:  5'- --gGGGGACGGgGUGCuguaacGGG-CCGGGAc -3'
miRNA:   3'- gggCCUCUGCUgUACG------UCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 10385 0.66 0.871866
Target:  5'- aCCUcggGGGGGCGGgGggagGCGGGagCCGGGGg -3'
miRNA:   3'- -GGG---CCUCUGCUgUa---CGUCCa-GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 151444 0.66 0.864565
Target:  5'- gCgGGGGGCGGCG-GCGGGgcggCCGcGGGc -3'
miRNA:   3'- gGgCCUCUGCUGUaCGUCCa---GGU-CCU- -5'
5748 3' -57.1 NC_001806.1 + 140039 0.67 0.857062
Target:  5'- gCCCGGAGcgccACGGCcgGCAuuuugaccguGGUCU-GGAc -3'
miRNA:   3'- -GGGCCUC----UGCUGuaCGU----------CCAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 63744 0.67 0.854773
Target:  5'- aUCCGGAGcACGGCccGCAcgucggugugccacGGcUCCAGGu -3'
miRNA:   3'- -GGGCCUC-UGCUGuaCGU--------------CC-AGGUCCu -5'
5748 3' -57.1 NC_001806.1 + 95396 0.67 0.852466
Target:  5'- uCCCGGGGGCgggggcgaggacgaaGACcgucgccGCGGGcCCGGGGg -3'
miRNA:   3'- -GGGCCUCUG---------------CUGua-----CGUCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 151572 0.67 0.849363
Target:  5'- gCCGcGAuGGCGGCGgcgGCGGG-CCAuGGAg -3'
miRNA:   3'- gGGC-CU-CUGCUGUa--CGUCCaGGU-CCU- -5'
5748 3' -57.1 NC_001806.1 + 56506 0.67 0.849363
Target:  5'- aCCUGG-GGCcACAgcgGCAGGcCCGGGc -3'
miRNA:   3'- -GGGCCuCUGcUGUa--CGUCCaGGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.