miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5751 3' -54.6 NC_001806.1 + 125848 0.66 0.938948
Target:  5'- cGGGCc-CCCGGccGCCgCGGAcGCCg -3'
miRNA:   3'- cUCCGaaGGGUUuuCGGgGUCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 16185 0.66 0.938948
Target:  5'- cGGGCgUCCCAGuGGgUUCAGgcGCCu -3'
miRNA:   3'- cUCCGaAGGGUUuUCgGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 79725 0.66 0.938948
Target:  5'- cAGGCUUCCgCGAcca-CCCAGGguuggcgGCCg -3'
miRNA:   3'- cUCCGAAGG-GUUuucgGGGUCUa------CGG- -5'
5751 3' -54.6 NC_001806.1 + 144566 0.66 0.938948
Target:  5'- aAGaCUUUCCGGgcGCgUCCGGGUGCCg -3'
miRNA:   3'- cUCcGAAGGGUUuuCG-GGGUCUACGG- -5'
5751 3' -54.6 NC_001806.1 + 2192 0.66 0.938948
Target:  5'- gGGGGCgccggUCCAAuuGCCCgcccaGGcgGCCg -3'
miRNA:   3'- -CUCCGaa---GGGUUuuCGGGg----UCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 80008 0.66 0.938948
Target:  5'- cAGGgUUCCCGuaggcGGGCCgCAGcgGCg -3'
miRNA:   3'- cUCCgAAGGGUu----UUCGGgGUCuaCGg -5'
5751 3' -54.6 NC_001806.1 + 87430 0.66 0.938948
Target:  5'- -cGGCgccCCUAAAucGCCCCuGGGUGUCc -3'
miRNA:   3'- cuCCGaa-GGGUUUu-CGGGG-UCUACGG- -5'
5751 3' -54.6 NC_001806.1 + 70163 0.66 0.938462
Target:  5'- cGGGGCggCCUc--GGCCCCacuaugcAGAUGgCCg -3'
miRNA:   3'- -CUCCGaaGGGuuuUCGGGG-------UCUAC-GG- -5'
5751 3' -54.6 NC_001806.1 + 34267 0.66 0.933975
Target:  5'- gGGGGCUUauaUguGGGGUCCCGGggGCg -3'
miRNA:   3'- -CUCCGAAg--GguUUUCGGGGUCuaCGg -5'
5751 3' -54.6 NC_001806.1 + 119514 0.66 0.933975
Target:  5'- cGGGGCUaCgCCAGGGcGCCCUGGuucaccagGCCg -3'
miRNA:   3'- -CUCCGAaG-GGUUUU-CGGGGUCua------CGG- -5'
5751 3' -54.6 NC_001806.1 + 144999 0.66 0.933975
Target:  5'- aGGGGCcccggCCC-GGGGCCCCAcaacgGCCc -3'
miRNA:   3'- -CUCCGaa---GGGuUUUCGGGGUcua--CGG- -5'
5751 3' -54.6 NC_001806.1 + 19387 0.66 0.933975
Target:  5'- gGGGGCUUCauCCu--GGuCCCCAGAcucgGUCg -3'
miRNA:   3'- -CUCCGAAG--GGuuuUC-GGGGUCUa---CGG- -5'
5751 3' -54.6 NC_001806.1 + 29827 0.66 0.933975
Target:  5'- cGGGGCgUCUCAcgcAGCCCCccAGccgGCCg -3'
miRNA:   3'- -CUCCGaAGGGUuu-UCGGGG--UCua-CGG- -5'
5751 3' -54.6 NC_001806.1 + 80274 0.66 0.933464
Target:  5'- -cGGUUUCCCGcc-GCCCCAcuacacggcagccGGUGgCCa -3'
miRNA:   3'- cuCCGAAGGGUuuuCGGGGU-------------CUAC-GG- -5'
5751 3' -54.6 NC_001806.1 + 45376 0.66 0.93295
Target:  5'- -uGGCcaaaugucugcCCCGGGGGCCCU-GGUGCCc -3'
miRNA:   3'- cuCCGaa---------GGGUUUUCGGGGuCUACGG- -5'
5751 3' -54.6 NC_001806.1 + 2098 0.66 0.928753
Target:  5'- -uGGCgagcagcCCCAGAaacuccacGGCCCCGGcgaagGCCa -3'
miRNA:   3'- cuCCGaa-----GGGUUU--------UCGGGGUCua---CGG- -5'
5751 3' -54.6 NC_001806.1 + 22569 0.66 0.928753
Target:  5'- gGGGGCcg-CgGGGAGCCCCGGc-GCCg -3'
miRNA:   3'- -CUCCGaagGgUUUUCGGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 92410 0.66 0.923281
Target:  5'- uGGGGUUUCCCAAgGAGCUgCgcgucaAGA-GCCg -3'
miRNA:   3'- -CUCCGAAGGGUU-UUCGGgG------UCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 52457 0.66 0.923281
Target:  5'- cGGGGCcgCCCu--GGCCgCGGAucUGCUc -3'
miRNA:   3'- -CUCCGaaGGGuuuUCGGgGUCU--ACGG- -5'
5751 3' -54.6 NC_001806.1 + 120856 0.66 0.923281
Target:  5'- uGGGac-CCCGGcGGCCCCuGgcGCCg -3'
miRNA:   3'- cUCCgaaGGGUUuUCGGGGuCuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.