miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5755 5' -51.2 NC_001806.1 + 11718 0.66 0.995156
Target:  5'- aCCCCGGGA---GGUuguGGUUUUggaUCUCCc -3'
miRNA:   3'- -GGGGCUCUuauUCGu--CCAGAA---GGAGG- -5'
5755 5' -51.2 NC_001806.1 + 57980 0.66 0.995082
Target:  5'- gCCCGGGc---AGCgccaucgAGGUCUUCCggaucgCCg -3'
miRNA:   3'- gGGGCUCuuauUCG-------UCCAGAAGGa-----GG- -5'
5755 5' -51.2 NC_001806.1 + 54961 0.66 0.994699
Target:  5'- gCCCGGGuuaaacaccuGguGGUCgUCCUCg -3'
miRNA:   3'- gGGGCUCuuauu-----CguCCAGaAGGAGg -5'
5755 5' -51.2 NC_001806.1 + 21173 0.66 0.994375
Target:  5'- aCCCCGAGcccagaccgcGAcGAGCGGGgggcCCUCg -3'
miRNA:   3'- -GGGGCUC----------UUaUUCGUCCagaaGGAGg -5'
5755 5' -51.2 NC_001806.1 + 68944 0.66 0.993496
Target:  5'- cCCCCGAGcgggGGGCuguGGUCccgCCgCCc -3'
miRNA:   3'- -GGGGCUCuua-UUCGu--CCAGaa-GGaGG- -5'
5755 5' -51.2 NC_001806.1 + 81481 0.66 0.993496
Target:  5'- gCCCUGGGggUGcGGguGGUUguuaUCCa -3'
miRNA:   3'- -GGGGCUCuuAU-UCguCCAGaaggAGG- -5'
5755 5' -51.2 NC_001806.1 + 85982 0.66 0.992509
Target:  5'- cUCCCGGGGGgucGGCAGG-CgacggcgUCUCCc -3'
miRNA:   3'- -GGGGCUCUUau-UCGUCCaGaa-----GGAGG- -5'
5755 5' -51.2 NC_001806.1 + 110326 0.66 0.992509
Target:  5'- aCCCCGGGcGUGuucccgacacGGCcuacuGGGUUUUCCguuUCCu -3'
miRNA:   3'- -GGGGCUCuUAU----------UCG-----UCCAGAAGG---AGG- -5'
5755 5' -51.2 NC_001806.1 + 142430 0.66 0.992191
Target:  5'- uUCCUGGGuGUuGGCAGGaaacgcgggguaacUCaagUCCUCCa -3'
miRNA:   3'- -GGGGCUCuUAuUCGUCC--------------AGa--AGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 70073 0.66 0.991407
Target:  5'- gCCCGGGAcuuUGGGCuGGgCUaUCUCCc -3'
miRNA:   3'- gGGGCUCUu--AUUCGuCCaGAaGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 58980 0.66 0.99018
Target:  5'- gCCCUGcAGGAccaccuGGCAGGgcgCccccUCCUCCg -3'
miRNA:   3'- -GGGGC-UCUUau----UCGUCCa--Ga---AGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 101300 0.66 0.99018
Target:  5'- gCCCUGuc---GGGCAGGggcUCCUCCa -3'
miRNA:   3'- -GGGGCucuuaUUCGUCCagaAGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 149889 0.66 0.99018
Target:  5'- uCCCUGGGGgucgcaacGUAGGCGGGgCUUCUg-- -3'
miRNA:   3'- -GGGGCUCU--------UAUUCGUCCaGAAGGagg -5'
5755 5' -51.2 NC_001806.1 + 55334 0.66 0.99018
Target:  5'- cCCCCGGGug-GGGCGGugauguucGUCaggaCCUCCu -3'
miRNA:   3'- -GGGGCUCuuaUUCGUC--------CAGaa--GGAGG- -5'
5755 5' -51.2 NC_001806.1 + 86741 0.66 0.99018
Target:  5'- gCCCGGGGGcgcGCAuGUCggccgCCUCCg -3'
miRNA:   3'- gGGGCUCUUauuCGUcCAGaa---GGAGG- -5'
5755 5' -51.2 NC_001806.1 + 67148 0.67 0.98882
Target:  5'- gCCCCGAccccaGGGC-GGUCg-CCUCCa -3'
miRNA:   3'- -GGGGCUcuua-UUCGuCCAGaaGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 99199 0.67 0.987318
Target:  5'- cCCCCGGGuGUccGCGGccugUUUCCUCUu -3'
miRNA:   3'- -GGGGCUCuUAuuCGUCca--GAAGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 30287 0.67 0.987318
Target:  5'- cCCCCGGGGcgGAGCcGGcCgcccgCC-CCg -3'
miRNA:   3'- -GGGGCUCUuaUUCGuCCaGaa---GGaGG- -5'
5755 5' -51.2 NC_001806.1 + 9791 0.67 0.985666
Target:  5'- gCCCCGAcgugcGggUGGGUGGGcUCggCCaaaUCCg -3'
miRNA:   3'- -GGGGCU-----CuuAUUCGUCC-AGaaGG---AGG- -5'
5755 5' -51.2 NC_001806.1 + 6964 0.67 0.981872
Target:  5'- aCCCGAGucucUGGGCggaGGGUgUUCCcCCc -3'
miRNA:   3'- gGGGCUCuu--AUUCG---UCCAgAAGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.