miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 3' -63.2 NC_001806.1 + 23700 0.65 0.644798
Target:  5'- gCCCuGGCCucgaucgccgcgcgGUGCGCcgGGCC--CGCCCc -3'
miRNA:   3'- aGGGcCCGG--------------CAUGCG--CCGGaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4058 0.66 0.638042
Target:  5'- gCUCGGGCgCccACaCGGCCgccggggCGCCCg -3'
miRNA:   3'- aGGGCCCG-GcaUGcGCCGGaa-----GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4027 0.66 0.638042
Target:  5'- aUCa-GGGCguacUGcUGCGCGGCg-UCGCCCa -3'
miRNA:   3'- -AGggCCCG----GC-AUGCGCCGgaAGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 51287 0.66 0.638042
Target:  5'- cCCUGcGGCUG-GCGCGguGCCUgaCGCCUg -3'
miRNA:   3'- aGGGC-CCGGCaUGCGC--CGGAa-GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 7813 0.66 0.638042
Target:  5'- -gUUGGGCCGccacGCGCGGCUg--GUCCa -3'
miRNA:   3'- agGGCCCGGCa---UGCGCCGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 6839 0.66 0.638042
Target:  5'- cUCCCGGGCU----GCuGCCcgaaaUCGCCCc -3'
miRNA:   3'- -AGGGCCCGGcaugCGcCGGa----AGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 134963 0.66 0.638042
Target:  5'- cCCCucaucgucGGCCGUcGCgGCGGCCaucccggUGCCCg -3'
miRNA:   3'- aGGGc-------CCGGCA-UG-CGCCGGaa-----GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 109943 0.66 0.638042
Target:  5'- cCCCGGGCUGcgagGCacaCGGCC---GCCCc -3'
miRNA:   3'- aGGGCCCGGCa---UGc--GCCGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 39184 0.66 0.638042
Target:  5'- cCCCGGGgCG---GCGGCCUU-GUCUg -3'
miRNA:   3'- aGGGCCCgGCaugCGCCGGAAgCGGG- -5'
5793 3' -63.2 NC_001806.1 + 81268 0.66 0.638042
Target:  5'- cCCCGGGCCucACGgGGUCccgggCGUCg -3'
miRNA:   3'- aGGGCCCGGcaUGCgCCGGaa---GCGGg -5'
5793 3' -63.2 NC_001806.1 + 96473 0.66 0.638042
Target:  5'- cCCCGGcacGCCuGggguCGCGGCCg-CGaCCCa -3'
miRNA:   3'- aGGGCC---CGG-Cau--GCGCCGGaaGC-GGG- -5'
5793 3' -63.2 NC_001806.1 + 2495 0.66 0.635146
Target:  5'- gUCgCCGccGCCGcACGCGGCCUgggcggcgggggcggGCCCg -3'
miRNA:   3'- -AG-GGCc-CGGCaUGCGCCGGAag-------------CGGG- -5'
5793 3' -63.2 NC_001806.1 + 99933 0.66 0.628388
Target:  5'- gUCCCGGGagaaugGCG-GGCCgcgCGCCg -3'
miRNA:   3'- -AGGGCCCggca--UGCgCCGGaa-GCGGg -5'
5793 3' -63.2 NC_001806.1 + 37784 0.66 0.628388
Target:  5'- cUCCgGGGCCGggGCGCGGgg---GUCCg -3'
miRNA:   3'- -AGGgCCCGGCa-UGCGCCggaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 23313 0.66 0.628388
Target:  5'- gCCCGGccgcCCGgagGCgGCGGCCcgCGaCCCc -3'
miRNA:   3'- aGGGCCc---GGCa--UG-CGCCGGaaGC-GGG- -5'
5793 3' -63.2 NC_001806.1 + 109222 0.66 0.628388
Target:  5'- cUCCCuuagcgugGGGCCGggcgGgGCGGaauCCUggGCCCc -3'
miRNA:   3'- -AGGG--------CCCGGCa---UgCGCC---GGAagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 20561 0.66 0.628388
Target:  5'- aUgCGGGgCGggGCGCGGaCCcaccCGCCCu -3'
miRNA:   3'- aGgGCCCgGCa-UGCGCC-GGaa--GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 70145 0.66 0.628388
Target:  5'- cUCCuCGaaccGGCCGcccgGgGCGGCCUcgGCCCc -3'
miRNA:   3'- -AGG-GC----CCGGCa---UgCGCCGGAagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 79740 0.66 0.628388
Target:  5'- aCCCaGG--GUugGCGGCCgccUGCCCu -3'
miRNA:   3'- aGGGcCCggCAugCGCCGGaa-GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 67401 0.66 0.625492
Target:  5'- gUCCaGGGCCuguucgguaucgucGUugGgGGUCagCGCCCc -3'
miRNA:   3'- -AGGgCCCGG--------------CAugCgCCGGaaGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.