miRNA display CGI


Results 1 - 20 of 236 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5794 3' -53.2 NC_001806.1 + 22549 0.65 0.976442
Target:  5'- cGCGAGAAcgcggcgcuGACGGGggccgcggggagccCCGGC-GCCGGCg -3'
miRNA:   3'- -UGCUUUU---------UUGUCU--------------GGUCGcCGGCCGg -5'
5794 3' -53.2 NC_001806.1 + 27848 0.66 0.974643
Target:  5'- cCGggGAcg-GGGCCGccccGCGGUgGGCCu -3'
miRNA:   3'- uGCuuUUuugUCUGGU----CGCCGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 6077 0.66 0.974643
Target:  5'- cCGggG--GCGGGCCcgGGCGGCgGGg- -3'
miRNA:   3'- uGCuuUuuUGUCUGG--UCGCCGgCCgg -5'
5794 3' -53.2 NC_001806.1 + 133112 0.66 0.974643
Target:  5'- uCGAGGAGACGG-CCAGCucGGUgaaguucgCGGUCu -3'
miRNA:   3'- uGCUUUUUUGUCuGGUCG--CCG--------GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 128157 0.66 0.974643
Target:  5'- cACGGucAGGCAGAUgAGCauGCCcggGGCCg -3'
miRNA:   3'- -UGCUuuUUUGUCUGgUCGc-CGG---CCGG- -5'
5794 3' -53.2 NC_001806.1 + 111195 0.66 0.974643
Target:  5'- cACGGgcccuGGGGAUAG-CCugcGCGGCCggGGCCu -3'
miRNA:   3'- -UGCU-----UUUUUGUCuGGu--CGCCGG--CCGG- -5'
5794 3' -53.2 NC_001806.1 + 95506 0.66 0.974643
Target:  5'- gGCGGcuGuacGCGGACCgccugacgaAGCGGUCguuGGCCa -3'
miRNA:   3'- -UGCUuuUu--UGUCUGG---------UCGCCGG---CCGG- -5'
5794 3' -53.2 NC_001806.1 + 78263 0.66 0.974643
Target:  5'- cGCGGcu-GGCAGACUGGCGcCgCGGCa -3'
miRNA:   3'- -UGCUuuuUUGUCUGGUCGCcG-GCCGg -5'
5794 3' -53.2 NC_001806.1 + 4748 0.66 0.974643
Target:  5'- cCGggGcc-CGGucGCCGGCGGCguCGGCUg -3'
miRNA:   3'- uGCuuUuuuGUC--UGGUCGCCG--GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 71140 0.66 0.974643
Target:  5'- gUGGAucuguCucGCCAGgGGCUGGCCg -3'
miRNA:   3'- uGCUUuuuu-GucUGGUCgCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 65776 0.66 0.974643
Target:  5'- gGCGGgcucGAGAGgGGACguCGGCGGguCCGGCg -3'
miRNA:   3'- -UGCU----UUUUUgUCUG--GUCGCC--GGCCGg -5'
5794 3' -53.2 NC_001806.1 + 74138 0.66 0.974643
Target:  5'- aGCGccAAGgcucuACAGGCCAGCGacaacaacgaccGCCGGUUu -3'
miRNA:   3'- -UGCuuUUU-----UGUCUGGUCGC------------CGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 55913 0.66 0.971902
Target:  5'- cGCGAGGGAuCGG-CUAGCGuucCCGGCa -3'
miRNA:   3'- -UGCUUUUUuGUCuGGUCGCc--GGCCGg -5'
5794 3' -53.2 NC_001806.1 + 21941 0.66 0.971902
Target:  5'- cGCGAcgccACGGGCCcuucaCGGCCGGgCa -3'
miRNA:   3'- -UGCUuuuuUGUCUGGuc---GCCGGCCgG- -5'
5794 3' -53.2 NC_001806.1 + 113986 0.66 0.971902
Target:  5'- cCGAGcc-GCGGACgCcGCGGaugaCCGGCCg -3'
miRNA:   3'- uGCUUuuuUGUCUG-GuCGCC----GGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 84240 0.66 0.971902
Target:  5'- gUGcuGAAACAcGGCCGGgGGCgCGGgCg -3'
miRNA:   3'- uGCuuUUUUGU-CUGGUCgCCG-GCCgG- -5'
5794 3' -53.2 NC_001806.1 + 95415 0.66 0.971902
Target:  5'- gACGAAGAccgucgccGCGGGCCcgGGgGGCaggGGCCc -3'
miRNA:   3'- -UGCUUUUu-------UGUCUGG--UCgCCGg--CCGG- -5'
5794 3' -53.2 NC_001806.1 + 60411 0.66 0.971902
Target:  5'- cCGAGucgcucuCAGACC--CGGCgGGCCa -3'
miRNA:   3'- uGCUUuuuu---GUCUGGucGCCGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 30027 0.66 0.971902
Target:  5'- aGCGGAGgcgGGGCGG-CCgAGgGGCCGGaCg -3'
miRNA:   3'- -UGCUUU---UUUGUCuGG-UCgCCGGCCgG- -5'
5794 3' -53.2 NC_001806.1 + 102520 0.66 0.971902
Target:  5'- cGCGGccAGGCAcGCCagguagcggGGCaGCCGGCCc -3'
miRNA:   3'- -UGCUuuUUUGUcUGG---------UCGcCGGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.