miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 136368 0.66 0.719657
Target:  5'- --gGGCCGgCGCGcuccGCGGCCuccGCGAc- -3'
miRNA:   3'- cuaCCGGCgGCGC----UGCCGGc--UGCUac -5'
5803 3' -61.1 NC_001806.1 + 134902 0.66 0.719657
Target:  5'- --cGGCCGCCuCGACcaGGCUG-CGGUc -3'
miRNA:   3'- cuaCCGGCGGcGCUG--CCGGCuGCUAc -5'
5803 3' -61.1 NC_001806.1 + 41600 0.66 0.719657
Target:  5'- --cGGauaagCGCCGCGAUcGCCGGgGGUGu -3'
miRNA:   3'- cuaCCg----GCGGCGCUGcCGGCUgCUAC- -5'
5803 3' -61.1 NC_001806.1 + 38387 0.66 0.719657
Target:  5'- --aGGUCGUCGCGGCGGCucucCGcCGGc- -3'
miRNA:   3'- cuaCCGGCGGCGCUGCCG----GCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 50336 0.66 0.71679
Target:  5'- --aGGCCGCCuuccuggggcgcguGCugGAUGuGCUGGCGGUGa -3'
miRNA:   3'- cuaCCGGCGG--------------CG--CUGC-CGGCUGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 135135 0.66 0.710076
Target:  5'- -cUGGaCGuCCGCGACgaacagGGCCG-CGAUGu -3'
miRNA:   3'- cuACCgGC-GGCGCUG------CCGGCuGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 29104 0.66 0.710076
Target:  5'- --gGGCUGCUGgGGCcgcaGGgCGugGAUGg -3'
miRNA:   3'- cuaCCGGCGGCgCUG----CCgGCugCUAC- -5'
5803 3' -61.1 NC_001806.1 + 3804 0.66 0.710076
Target:  5'- --cGGCCGCCGCGuGCGccaggccccaGCCGaaGCGGc- -3'
miRNA:   3'- cuaCCGGCGGCGC-UGC----------CGGC--UGCUac -5'
5803 3' -61.1 NC_001806.1 + 24640 0.66 0.710076
Target:  5'- --gGGCgCGCCGCuGCGGCCcguguacguGGCGcUGg -3'
miRNA:   3'- cuaCCG-GCGGCGcUGCCGG---------CUGCuAC- -5'
5803 3' -61.1 NC_001806.1 + 2500 0.66 0.710076
Target:  5'- ---cGCCGCCGCacGCGGCCugGGCGGc- -3'
miRNA:   3'- cuacCGGCGGCGc-UGCCGG--CUGCUac -5'
5803 3' -61.1 NC_001806.1 + 130500 0.66 0.710076
Target:  5'- --aGGCCGCCGaGACGGagGA-GGUGg -3'
miRNA:   3'- cuaCCGGCGGCgCUGCCggCUgCUAC- -5'
5803 3' -61.1 NC_001806.1 + 51103 0.66 0.700433
Target:  5'- aGggGGCCGCCGCccuGCGGgCGcACG-UGu -3'
miRNA:   3'- -CuaCCGGCGGCGc--UGCCgGC-UGCuAC- -5'
5803 3' -61.1 NC_001806.1 + 4328 0.66 0.700433
Target:  5'- --cGGCCaccGCCGCG-CGGgcCCGGCGGc- -3'
miRNA:   3'- cuaCCGG---CGGCGCuGCC--GGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 100321 0.66 0.690738
Target:  5'- --gGGgCGCgGC-AUGGCCGGCGAc- -3'
miRNA:   3'- cuaCCgGCGgCGcUGCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 147813 0.66 0.690738
Target:  5'- cAUGGgCGCCGCgGGgGGCCuGugGGg- -3'
miRNA:   3'- cUACCgGCGGCG-CUgCCGG-CugCUac -5'
5803 3' -61.1 NC_001806.1 + 87554 0.66 0.690738
Target:  5'- ---cGCCaaGCgCGCGACGGCCGAgagcuccaGAUGg -3'
miRNA:   3'- cuacCGG--CG-GCGCUGCCGGCUg-------CUAC- -5'
5803 3' -61.1 NC_001806.1 + 86396 0.66 0.690738
Target:  5'- --cGGCUaaCGCGGCGGCCgcuccggaGACGGUa -3'
miRNA:   3'- cuaCCGGcgGCGCUGCCGG--------CUGCUAc -5'
5803 3' -61.1 NC_001806.1 + 61594 0.66 0.689766
Target:  5'- --aGGCCGUCGUGugcACGGCCucgucccGGCuGAUGa -3'
miRNA:   3'- cuaCCGGCGGCGC---UGCCGG-------CUG-CUAC- -5'
5803 3' -61.1 NC_001806.1 + 73126 0.66 0.680996
Target:  5'- --cGGUCGCCGaGGCGGgCGAgGAc- -3'
miRNA:   3'- cuaCCGGCGGCgCUGCCgGCUgCUac -5'
5803 3' -61.1 NC_001806.1 + 42720 0.66 0.680996
Target:  5'- cGUGGCCuCCGCGuccAgGGUggCGGCGAUGu -3'
miRNA:   3'- cUACCGGcGGCGC---UgCCG--GCUGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.