miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 3' -60.9 NC_001806.1 + 1939 0.66 0.703736
Target:  5'- cGGCGCa-GGUC-CCgcgCCgCCGGCCAg -3'
miRNA:   3'- -UCGCGgaCCAGuGGa--GGgGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 121373 0.66 0.703736
Target:  5'- uGGCGCguauCUGGUCcccgcgaagACC-CCCCCGgaGCCGg -3'
miRNA:   3'- -UCGCG----GACCAG---------UGGaGGGGGU--UGGUg -5'
5825 3' -60.9 NC_001806.1 + 137746 0.66 0.703736
Target:  5'- gGGCuCCUuggGcGUCACCUCCUCaCGGCCGu -3'
miRNA:   3'- -UCGcGGA---C-CAGUGGAGGGG-GUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 120250 0.66 0.700797
Target:  5'- cGCGCCgucgaGGggACCgCCCCCGacgccuuuuuucacACCGCg -3'
miRNA:   3'- uCGCGGa----CCagUGGaGGGGGU--------------UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 22770 0.66 0.693923
Target:  5'- cGaCGCCgGG-CGCCgcgCCCaggCCGGCCGCg -3'
miRNA:   3'- uC-GCGGaCCaGUGGa--GGG---GGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 68188 0.66 0.693923
Target:  5'- cAGCGCCuauUGG-CgagccuagccgGCCUUCgCCAACCGCc -3'
miRNA:   3'- -UCGCGG---ACCaG-----------UGGAGGgGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 78311 0.66 0.693923
Target:  5'- uGGCGcCCUGG-CGCUcggUCCCCgAGCUg- -3'
miRNA:   3'- -UCGC-GGACCaGUGG---AGGGGgUUGGug -5'
5825 3' -60.9 NC_001806.1 + 88721 0.66 0.693923
Target:  5'- aGGUGCCU-GUCgACCUCCUCCuuguUCAUg -3'
miRNA:   3'- -UCGCGGAcCAG-UGGAGGGGGuu--GGUG- -5'
5825 3' -60.9 NC_001806.1 + 113289 0.66 0.693923
Target:  5'- gAGCuGCCggggGGggACgUUCCCCCGGCCGg -3'
miRNA:   3'- -UCG-CGGa---CCagUG-GAGGGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 45132 0.66 0.693923
Target:  5'- uGUGCCa-GUCGCCaucguaCCCCCGACC-Ca -3'
miRNA:   3'- uCGCGGacCAGUGGa-----GGGGGUUGGuG- -5'
5825 3' -60.9 NC_001806.1 + 23543 0.66 0.692939
Target:  5'- gGGCGgCUGG-CGgCggcagCCCCCGgggcccaGCCACa -3'
miRNA:   3'- -UCGCgGACCaGUgGa----GGGGGU-------UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 120160 0.66 0.684061
Target:  5'- cAGCGCCUGcGcuaUgACUUUggCCCCGACCAa -3'
miRNA:   3'- -UCGCGGAC-C---AgUGGAG--GGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 67163 0.66 0.684061
Target:  5'- cGGuCGCCUccaucagcuGGcCccagGCCUCgCCCAGCCGCu -3'
miRNA:   3'- -UC-GCGGA---------CCaG----UGGAGgGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 109186 0.66 0.684061
Target:  5'- cAGCGCCcGGUCugCggCauaaaacaCCC-ACCACa -3'
miRNA:   3'- -UCGCGGaCCAGugGa-Gg-------GGGuUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 100715 0.66 0.684061
Target:  5'- cAGCGUgUGGgucagCGCCUCCaCgCCGGgCGCc -3'
miRNA:   3'- -UCGCGgACCa----GUGGAGG-G-GGUUgGUG- -5'
5825 3' -60.9 NC_001806.1 + 91051 0.66 0.684061
Target:  5'- cAGCGCCUGG---CCUCCgUCAuggccggagacGCCGCc -3'
miRNA:   3'- -UCGCGGACCaguGGAGGgGGU-----------UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 70510 0.66 0.684061
Target:  5'- -cCGCCUGGggcCCUggcCCCCCGagGCCAUg -3'
miRNA:   3'- ucGCGGACCaguGGA---GGGGGU--UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 70259 0.66 0.684061
Target:  5'- cGGCcCCUGGUCcaGCUgcagCCCCCc-CCGCc -3'
miRNA:   3'- -UCGcGGACCAG--UGGa---GGGGGuuGGUG- -5'
5825 3' -60.9 NC_001806.1 + 65201 0.66 0.684061
Target:  5'- cGGgGCCgacUGGaUCccCCUCCCCCccgaauACCGCa -3'
miRNA:   3'- -UCgCGG---ACC-AGu-GGAGGGGGu-----UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 41016 0.66 0.684061
Target:  5'- uGGCGCCcGGgu-CCUCCgCCCAcuccucAUCACc -3'
miRNA:   3'- -UCGCGGaCCaguGGAGG-GGGU------UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.