miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 5' -56.7 NC_001806.1 + 65029 0.66 0.887188
Target:  5'- aCGGGGCCAucuaucugcaggGAGUCAUccgaugacgaaucggAGUcaaGGGCGu -3'
miRNA:   3'- aGCCCCGGU------------UUCAGUA---------------UCGcg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 14415 0.66 0.88443
Target:  5'- -aGGGGuCCGuuGUguUGGCcGCAGGUc -3'
miRNA:   3'- agCCCC-GGUuuCAguAUCG-CGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 2859 0.66 0.87738
Target:  5'- gCGGGGa--GGGg---GGCGCGGGCGu -3'
miRNA:   3'- aGCCCCgguUUCaguaUCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 55075 0.66 0.87738
Target:  5'- gUGGGGCUggAGGGUCAgAGacgGgGGGCGg -3'
miRNA:   3'- aGCCCCGG--UUUCAGUaUCg--CgUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 120335 0.66 0.87738
Target:  5'- gUCGGGGgCGgcGGGUCGUccCGCucGGCGa -3'
miRNA:   3'- -AGCCCCgGU--UUCAGUAucGCGu-CCGC- -5'
5825 5' -56.7 NC_001806.1 + 95046 0.66 0.873045
Target:  5'- gCGGuGGCCGuggaacuggcgcuGUUcgGGCGgCGGGCGg -3'
miRNA:   3'- aGCC-CCGGUuu-----------CAGuaUCGC-GUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 3523 0.66 0.873045
Target:  5'- gUCGGGGUCGucgccccccgcggggGAGgcg-GGCGC-GGCGg -3'
miRNA:   3'- -AGCCCCGGU---------------UUCaguaUCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 77537 0.66 0.870111
Target:  5'- cCGGGGCCccuGGUgCu--GCGCgAGGCc -3'
miRNA:   3'- aGCCCCGGuu-UCA-GuauCGCG-UCCGc -5'
5825 5' -56.7 NC_001806.1 + 96425 0.66 0.869372
Target:  5'- cUUGGGGUUgacgcugGGGGUCcugGUGGCGUcGGCGg -3'
miRNA:   3'- -AGCCCCGG-------UUUCAG---UAUCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25233 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25301 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25369 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 42025 0.66 0.862628
Target:  5'- gCGGGGUUggGGUCGUGGguCGuCAcGGCc -3'
miRNA:   3'- aGCCCCGGuuUCAGUAUC--GC-GU-CCGc -5'
5825 5' -56.7 NC_001806.1 + 25199 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25267 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25097 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25131 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25165 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25335 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 57046 0.67 0.847045
Target:  5'- cCGGGGCCGGGGccccCGgcuGCGUgccGGGCu -3'
miRNA:   3'- aGCCCCGGUUUCa---GUau-CGCG---UCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.