miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5828 3' -57.3 NC_001806.1 + 17167 0.66 0.848172
Target:  5'- cUCCAagGGCccccCCGGGAAGGCgGGUc -3'
miRNA:   3'- cAGGUggUUGu---GGCCCUUCCGgUCAu -5'
5828 3' -57.3 NC_001806.1 + 89317 0.66 0.848172
Target:  5'- -gCCGCCGACuuuccuCCGGGGgacagcGGGCCGc-- -3'
miRNA:   3'- caGGUGGUUGu-----GGCCCU------UCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 6064 0.66 0.848172
Target:  5'- cUCCgcGCCGGCcCCGGGGgcGGGcCCGGg- -3'
miRNA:   3'- cAGG--UGGUUGuGGCCCU--UCC-GGUCau -5'
5828 3' -57.3 NC_001806.1 + 30406 0.66 0.848172
Target:  5'- --gCGCgCGGC-UCGGGggGGCCGGg- -3'
miRNA:   3'- cagGUG-GUUGuGGCCCuuCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 2933 0.66 0.840083
Target:  5'- -gCCGCCuccgGGCgGCCGGGccGGGCCGGg- -3'
miRNA:   3'- caGGUGG----UUG-UGGCCCu-UCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 2014 0.66 0.840083
Target:  5'- -gCUGCCGcgACACCGcGGGcccgucggcGGGCCAGUc -3'
miRNA:   3'- caGGUGGU--UGUGGC-CCU---------UCCGGUCAu -5'
5828 3' -57.3 NC_001806.1 + 93518 0.66 0.840083
Target:  5'- -cUCGgCAACGCCGGGGAGGUg---- -3'
miRNA:   3'- caGGUgGUUGUGGCCCUUCCGgucau -5'
5828 3' -57.3 NC_001806.1 + 38483 0.66 0.835137
Target:  5'- -gUCGCCAugACCGGGcugucggcugccgucGGGGCUGGg- -3'
miRNA:   3'- caGGUGGUugUGGCCC---------------UUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 93089 0.66 0.835137
Target:  5'- -gCCGgCAACgaccguguguuucagGCCGGGAacuGGGCCAGc- -3'
miRNA:   3'- caGGUgGUUG---------------UGGCCCU---UCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 61437 0.66 0.831803
Target:  5'- -gCCGCCAGCGCCGcc-GGGCuCAGg- -3'
miRNA:   3'- caGGUGGUUGUGGCccuUCCG-GUCau -5'
5828 3' -57.3 NC_001806.1 + 89260 0.66 0.831803
Target:  5'- gGUCC-CCGGCuggcuCCGcGAGGGCCGGc- -3'
miRNA:   3'- -CAGGuGGUUGu----GGCcCUUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 64950 0.66 0.831803
Target:  5'- -aCCACCGGCGUCGGcGcccGGGCCGGg- -3'
miRNA:   3'- caGGUGGUUGUGGCC-Cu--UCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 71683 0.66 0.82334
Target:  5'- gGUCCAUaAACagGCCGGGucucuGGCCAGc- -3'
miRNA:   3'- -CAGGUGgUUG--UGGCCCuu---CCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 88200 0.66 0.82334
Target:  5'- gGUCCuCCGGgugcccggcCACCGGaAAGGCCAGc- -3'
miRNA:   3'- -CAGGuGGUU---------GUGGCCcUUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 37408 0.66 0.814702
Target:  5'- --aCGCCAGCGucucgUCGGcGGAGGCCAGc- -3'
miRNA:   3'- cagGUGGUUGU-----GGCC-CUUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 59864 0.66 0.813829
Target:  5'- -cCCGCaCGACggcccagGCCGGacggacgaGGAGGCCAGUGa -3'
miRNA:   3'- caGGUG-GUUG-------UGGCC--------CUUCCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 112027 0.67 0.809439
Target:  5'- -gCCACCGAgGCCaucgcccugcucacgGGGGAGGCCcuggacgggacgGGUAu -3'
miRNA:   3'- caGGUGGUUgUGG---------------CCCUUCCGG------------UCAU- -5'
5828 3' -57.3 NC_001806.1 + 73450 0.67 0.805897
Target:  5'- --aCACCcAgGCCGGGguGGCCGGc- -3'
miRNA:   3'- cagGUGGuUgUGGCCCuuCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 20456 0.67 0.805897
Target:  5'- -aCCGCCGA-ACCGGGAagucgGGGcCCGGg- -3'
miRNA:   3'- caGGUGGUUgUGGCCCU-----UCC-GGUCau -5'
5828 3' -57.3 NC_001806.1 + 5654 0.67 0.805897
Target:  5'- aUCUGCCAugGgCGGGGcgcgaGGGCgGGUGg -3'
miRNA:   3'- cAGGUGGUugUgGCCCU-----UCCGgUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.