miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 3' -65.8 NC_001806.1 + 17054 0.66 0.520891
Target:  5'- aCCCCGaacgaCGGGCCCCGGG-GUUUu -3'
miRNA:   3'- gGGGGUcgag-GUCCGGGGCCCgCAGG- -5'
5835 3' -65.8 NC_001806.1 + 144119 0.66 0.520891
Target:  5'- cCCCCCuGCcuUCCAcccuccGGCCCCccGCGagUCCa -3'
miRNA:   3'- -GGGGGuCG--AGGU------CCGGGGccCGC--AGG- -5'
5835 3' -65.8 NC_001806.1 + 2930 0.66 0.520891
Target:  5'- gCCgCCGcCUCCGGGCggCCGGGCcgggCCg -3'
miRNA:   3'- -GGgGGUcGAGGUCCGg-GGCCCGca--GG- -5'
5835 3' -65.8 NC_001806.1 + 122514 0.66 0.519981
Target:  5'- gCUCCAGCgugCCGuacguccGGCCgUGGGUGgCCa -3'
miRNA:   3'- gGGGGUCGa--GGU-------CCGGgGCCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 7456 0.66 0.518162
Target:  5'- aCCCCCcgcgaaccacguacGGCUCgCGGGUcuguauagCCCGGGCa--- -3'
miRNA:   3'- -GGGGG--------------UCGAG-GUCCG--------GGGCCCGcagg -5'
5835 3' -65.8 NC_001806.1 + 22103 0.66 0.511817
Target:  5'- gCCUgGGCgacagccgcCCGGGCCUCugggGGGCGcCCg -3'
miRNA:   3'- gGGGgUCGa--------GGUCCGGGG----CCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 78571 0.66 0.511817
Target:  5'- cCCCCCAacgccCUCUAccGGCCCaCGGGCcagcacGUCg -3'
miRNA:   3'- -GGGGGUc----GAGGU--CCGGG-GCCCG------CAGg -5'
5835 3' -65.8 NC_001806.1 + 78929 0.66 0.511817
Target:  5'- gCCCCUcGC-CCGGGgCCCGccGUGUCUg -3'
miRNA:   3'- -GGGGGuCGaGGUCCgGGGCc-CGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 44431 0.66 0.511817
Target:  5'- gCCCCaacacauagcaGGC-CgCGGGCCC--GGCGUCCg -3'
miRNA:   3'- gGGGG-----------UCGaG-GUCCGGGgcCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 140947 0.66 0.511817
Target:  5'- gCCUCCcGUUCCGGGCCCCcguguaaaGGUugGUCa -3'
miRNA:   3'- -GGGGGuCGAGGUCCGGGGc-------CCG--CAGg -5'
5835 3' -65.8 NC_001806.1 + 150640 0.66 0.506404
Target:  5'- gCCCCgaagacuCGGCggacgcugguuggCCGGGCCCCGccgcgcuGGCGgCCg -3'
miRNA:   3'- -GGGG-------GUCGa------------GGUCCGGGGC-------CCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 43143 0.66 0.502809
Target:  5'- uCCCCgCGGUUCCcgucuuccuGCCCCauuGCGUCCg -3'
miRNA:   3'- -GGGG-GUCGAGGuc-------CGGGGcc-CGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 20365 0.66 0.502809
Target:  5'- gCCgCCC-GCcgUCCcguuGGUCCC-GGCGUCCg -3'
miRNA:   3'- -GG-GGGuCG--AGGu---CCGGGGcCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 90025 0.66 0.502809
Target:  5'- cCCCCCGgauuuugacGCUCgGGaGacauaCCuuguCGGGCGUCCg -3'
miRNA:   3'- -GGGGGU---------CGAGgUC-Cg----GG----GCCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 89261 0.66 0.502809
Target:  5'- gUCCCCggcuGGCUCCgcgaGGGCCggCGGGCG-Ca -3'
miRNA:   3'- -GGGGG----UCGAGG----UCCGGg-GCCCGCaGg -5'
5835 3' -65.8 NC_001806.1 + 46103 0.66 0.502809
Target:  5'- -gUCCGGCcCgGGGCCUgcgCGGGCGccUCCg -3'
miRNA:   3'- ggGGGUCGaGgUCCGGG---GCCCGC--AGG- -5'
5835 3' -65.8 NC_001806.1 + 132544 0.66 0.502809
Target:  5'- gCCCgAGUUUgAGGUCCgGGGgggaccCGUCCc -3'
miRNA:   3'- gGGGgUCGAGgUCCGGGgCCC------GCAGG- -5'
5835 3' -65.8 NC_001806.1 + 91340 0.66 0.502809
Target:  5'- uCCUCguGC-CCGGGaCCCaCGuGGCGgCCa -3'
miRNA:   3'- -GGGGguCGaGGUCC-GGG-GC-CCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 130462 0.66 0.502809
Target:  5'- gCUgCGGUgCCGGGaUCCCGaGGCGUCg -3'
miRNA:   3'- gGGgGUCGaGGUCC-GGGGC-CCGCAGg -5'
5835 3' -65.8 NC_001806.1 + 67775 0.66 0.501016
Target:  5'- gCCUCCGGUggguuguguuggCCGacuGG-CCCGGcGCGUCCg -3'
miRNA:   3'- -GGGGGUCGa-----------GGU---CCgGGGCC-CGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.