miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5893 5' -59.1 NC_001806.1 + 81641 0.66 0.765097
Target:  5'- ---uGGGgGUGuCGGUCGGGAGGGCuGUg -3'
miRNA:   3'- aaggUCUgCGC-GCCAGUCUUCCCG-CA- -5'
5893 5' -59.1 NC_001806.1 + 39276 0.66 0.765097
Target:  5'- -aCCAgGugGUGaUGGUCAGAaacAGGGgGUa -3'
miRNA:   3'- aaGGU-CugCGC-GCCAGUCU---UCCCgCA- -5'
5893 5' -59.1 NC_001806.1 + 120188 0.66 0.755672
Target:  5'- -aCCAacGCGCGUGGUUGGggGaGGUGa -3'
miRNA:   3'- aaGGUc-UGCGCGCCAGUCuuC-CCGCa -5'
5893 5' -59.1 NC_001806.1 + 126830 0.66 0.755672
Target:  5'- --gCAGGCaccgcaccaGCGCGG--AGGAGGGCGUa -3'
miRNA:   3'- aagGUCUG---------CGCGCCagUCUUCCCGCA- -5'
5893 5' -59.1 NC_001806.1 + 147775 0.66 0.755672
Target:  5'- --gCGGACGCGgGGggccCGGGgcggGGGGCGg -3'
miRNA:   3'- aagGUCUGCGCgCCa---GUCU----UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 28378 0.66 0.755672
Target:  5'- -aCCGGGgGCGCcauGUUAGggGGuGCGg -3'
miRNA:   3'- aaGGUCUgCGCGc--CAGUCuuCC-CGCa -5'
5893 5' -59.1 NC_001806.1 + 52712 0.66 0.755672
Target:  5'- gUUCCGGAggcgcCGCGCGGaCGGcgcGGGGCc- -3'
miRNA:   3'- -AAGGUCU-----GCGCGCCaGUCu--UCCCGca -5'
5893 5' -59.1 NC_001806.1 + 149238 0.66 0.755672
Target:  5'- cUCCAGACGCacCGGagUCGGggGucccacGGCGUc -3'
miRNA:   3'- aAGGUCUGCGc-GCC--AGUCuuC------CCGCA- -5'
5893 5' -59.1 NC_001806.1 + 38382 0.66 0.749965
Target:  5'- aUUCCAGGuCGuCGCGGcggcucuccgccggcUCGGggGGGUc- -3'
miRNA:   3'- -AAGGUCU-GC-GCGCC---------------AGUCuuCCCGca -5'
5893 5' -59.1 NC_001806.1 + 37792 0.66 0.74614
Target:  5'- -cCgGGGCGCGgGGguccgcgggCGGggGGGCa- -3'
miRNA:   3'- aaGgUCUGCGCgCCa--------GUCuuCCCGca -5'
5893 5' -59.1 NC_001806.1 + 50017 0.66 0.74614
Target:  5'- ---gAGGCGCGCgGGUCuGAccuggacgacAGGGCGg -3'
miRNA:   3'- aaggUCUGCGCG-CCAGuCU----------UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 35124 0.66 0.74614
Target:  5'- gUCCcGugGaCGCGGcccUCGGuuGGGCGa -3'
miRNA:   3'- aAGGuCugC-GCGCC---AGUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 56769 0.66 0.74614
Target:  5'- --aCAGACGCgGCGGUgGucGGGGCa- -3'
miRNA:   3'- aagGUCUGCG-CGCCAgUcuUCCCGca -5'
5893 5' -59.1 NC_001806.1 + 57741 0.66 0.74614
Target:  5'- cUCCGGGCGUcuggaGCGG-CGGGAcGGGCc- -3'
miRNA:   3'- aAGGUCUGCG-----CGCCaGUCUU-CCCGca -5'
5893 5' -59.1 NC_001806.1 + 128562 0.66 0.74614
Target:  5'- gUCCAGG-GCGCGGUCguagcgGGAGGucacGGCGc -3'
miRNA:   3'- aAGGUCUgCGCGCCAG------UCUUC----CCGCa -5'
5893 5' -59.1 NC_001806.1 + 9823 0.66 0.74614
Target:  5'- aUCCGcGcCGCGCuGUgGGAGGGGCu- -3'
miRNA:   3'- aAGGU-CuGCGCGcCAgUCUUCCCGca -5'
5893 5' -59.1 NC_001806.1 + 89760 0.66 0.73651
Target:  5'- -cCCAccggcugauGACGCGCGGggcgugGGAGGGGCu- -3'
miRNA:   3'- aaGGU---------CUGCGCGCCag----UCUUCCCGca -5'
5893 5' -59.1 NC_001806.1 + 49473 0.67 0.724838
Target:  5'- gUCCcgucGACGCGCGGgcuauuuuGGGGCGg -3'
miRNA:   3'- aAGGu---CUGCGCGCCagucu---UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 59148 0.67 0.716993
Target:  5'- -gCCGGGCcggggucucggGUGCGGgacgCGGAgGGGGCGUa -3'
miRNA:   3'- aaGGUCUG-----------CGCGCCa---GUCU-UCCCGCA- -5'
5893 5' -59.1 NC_001806.1 + 2853 0.67 0.716993
Target:  5'- --gCGGGCGCGgGG--AGggGGGCGc -3'
miRNA:   3'- aagGUCUGCGCgCCagUCuuCCCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.