miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 134301 0.66 0.824823
Target:  5'- -gGCCGagagaacgGGGGGCgGGUuguuGGCCAGCa -3'
miRNA:   3'- gaUGGUa-------CCUCCGgUCGuc--UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 133251 0.66 0.807452
Target:  5'- -gGCCGUGGGaGCCGuGCuuAGGGCCAacGCc -3'
miRNA:   3'- gaUGGUACCUcCGGU-CG--UCUCGGU--CG- -5'
5976 3' -57.4 NC_001806.1 + 132700 0.71 0.57374
Target:  5'- -cGCgGUGGGGGCCAGgGucguccuccccccgcGAGCUGGCc -3'
miRNA:   3'- gaUGgUACCUCCGGUCgU---------------CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 132616 0.69 0.682155
Target:  5'- -cACCGUGccGGCCacGGCcGAGUCGGCa -3'
miRNA:   3'- gaUGGUACcuCCGG--UCGuCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 131974 0.73 0.434782
Target:  5'- -gGCCcUGGAGcGCCAGaCcGGGCCGGUg -3'
miRNA:   3'- gaUGGuACCUC-CGGUC-GuCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 129701 0.66 0.833249
Target:  5'- -cGCCucuccGGAGGCCcGgGGGGCCAcGUu -3'
miRNA:   3'- gaUGGua---CCUCCGGuCgUCUCGGU-CG- -5'
5976 3' -57.4 NC_001806.1 + 128874 0.67 0.780217
Target:  5'- aUGCCuuucGUGGGGGgC-GCGGAGUCGGg -3'
miRNA:   3'- gAUGG----UACCUCCgGuCGUCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 128709 0.66 0.824823
Target:  5'- -gGCCGUGGAGuucaccCCGGCAuaaGAGCUcgccuGGCg -3'
miRNA:   3'- gaUGGUACCUCc-----GGUCGU---CUCGG-----UCG- -5'
5976 3' -57.4 NC_001806.1 + 128529 0.66 0.841491
Target:  5'- -gGCCAUGcGGGCC-GCAGccagacggcGGCCcGCg -3'
miRNA:   3'- gaUGGUACcUCCGGuCGUC---------UCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 128427 0.74 0.387825
Target:  5'- -aACCA-GGuGGGCCAGCuggcugaugcgauGGGCCAGCa -3'
miRNA:   3'- gaUGGUaCC-UCCGGUCGu------------CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 122777 0.66 0.841491
Target:  5'- gUACCAacucGGGGGCCAGgAauuCCAGCu -3'
miRNA:   3'- gAUGGUa---CCUCCGGUCgUcucGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 119560 0.72 0.481061
Target:  5'- -cGCCAUGGGGGCgGcugacgcagauGCGGuGCUGGCg -3'
miRNA:   3'- gaUGGUACCUCCGgU-----------CGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 107023 0.67 0.761377
Target:  5'- gCUugCcgGGuuGGCCGcccGCGGGGCC-GCg -3'
miRNA:   3'- -GAugGuaCCu-CCGGU---CGUCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 100311 0.68 0.742077
Target:  5'- -gGCUggGGuugGGGCgCGGCAuGGCCGGCg -3'
miRNA:   3'- gaUGGuaCC---UCCG-GUCGUcUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 98928 0.66 0.819683
Target:  5'- uCUGCCAUGGAgcgcacggaacacaaGGCCAaGaagaAGGGCacgAGCg -3'
miRNA:   3'- -GAUGGUACCU---------------CCGGU-Cg---UCUCGg--UCG- -5'
5976 3' -57.4 NC_001806.1 + 98028 0.67 0.78944
Target:  5'- -cACCGUG--GGCCGGCGG-GUgAGCg -3'
miRNA:   3'- gaUGGUACcuCCGGUCGUCuCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 94198 0.67 0.751781
Target:  5'- -gGCC-UGGAGGCCcaGGCcGGGGCCu-- -3'
miRNA:   3'- gaUGGuACCUCCGG--UCG-UCUCGGucg -5'
5976 3' -57.4 NC_001806.1 + 93098 0.68 0.702392
Target:  5'- -gACCGUGuGuuucAGGCCGGgAacuGGGCCAGCc -3'
miRNA:   3'- gaUGGUAC-C----UCCGGUCgU---CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 92933 0.67 0.761377
Target:  5'- -gGCC-UGGAGGCC---GGGGCCcGCg -3'
miRNA:   3'- gaUGGuACCUCCGGucgUCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 88366 0.76 0.312994
Target:  5'- -gGCCAUcGGGGccGCCGGCuGGGCUAGCg -3'
miRNA:   3'- gaUGGUA-CCUC--CGGUCGuCUCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.