miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5980 5' -51.5 NC_001806.1 + 81696 0.68 0.944475
Target:  5'- -gAUUAGGGCGGcGGUGCGuccuuuuuuauaGGCGCg-- -3'
miRNA:   3'- aaUAAUCCCGCU-UCACGC------------UCGUGacc -5'
5980 5' -51.5 NC_001806.1 + 81666 0.75 0.648727
Target:  5'- ---gUGGGGCGAAG-GCGuccggaacGCACUGGc -3'
miRNA:   3'- aauaAUCCCGCUUCaCGCu-------CGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 79263 0.66 0.988393
Target:  5'- cUUGUUGGGGCGGAGgGCucguuggggcccgGaAGC-CUGGc -3'
miRNA:   3'- -AAUAAUCCCGCUUCaCG-------------C-UCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 76390 0.66 0.988542
Target:  5'- ------uGGUGgcGUGCGuggcGGCGCUGGa -3'
miRNA:   3'- aauaaucCCGCuuCACGC----UCGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 74962 0.69 0.929329
Target:  5'- -----cGGGCGGAcauGUGgGGGCuGCUGGg -3'
miRNA:   3'- aauaauCCCGCUU---CACgCUCG-UGACC- -5'
5980 5' -51.5 NC_001806.1 + 72499 0.71 0.86219
Target:  5'- ----cGGGGCGAGaucGCGGGC-CUGGg -3'
miRNA:   3'- aauaaUCCCGCUUca-CGCUCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 71935 0.66 0.980638
Target:  5'- ----gGGGGCG-AGUggacgcgcgcgaccGCGGGCcCUGGg -3'
miRNA:   3'- aauaaUCCCGCuUCA--------------CGCUCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 57010 0.66 0.986978
Target:  5'- ----aGGcGGCGcccAGUGCcaGGCACUGGg -3'
miRNA:   3'- aauaaUC-CCGCu--UCACGc-UCGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 49859 0.66 0.986978
Target:  5'- ----cAGGGCGAGGcGUuGGC-CUGGu -3'
miRNA:   3'- aauaaUCCCGCUUCaCGcUCGuGACC- -5'
5980 5' -51.5 NC_001806.1 + 45511 0.66 0.985256
Target:  5'- ---gUGGGGUGAggGGUGgGGGUGgaGGg -3'
miRNA:   3'- aauaAUCCCGCU--UCACgCUCGUgaCC- -5'
5980 5' -51.5 NC_001806.1 + 45347 0.71 0.86219
Target:  5'- ----gGGGGCGcgcGGUGCGAGacccaaaaCACUGGc -3'
miRNA:   3'- aauaaUCCCGCu--UCACGCUC--------GUGACC- -5'
5980 5' -51.5 NC_001806.1 + 45319 0.67 0.97393
Target:  5'- ------cGGCGAGGaggGCGGGCGCgaugGGa -3'
miRNA:   3'- aauaaucCCGCUUCa--CGCUCGUGa---CC- -5'
5980 5' -51.5 NC_001806.1 + 42638 0.66 0.981295
Target:  5'- ----cGGcGGCGucgcguccGGUGCGGGgGCUGGc -3'
miRNA:   3'- aauaaUC-CCGCu-------UCACGCUCgUGACC- -5'
5980 5' -51.5 NC_001806.1 + 41850 0.68 0.949009
Target:  5'- -----cGGGCGcguacGUGCGAGCGCgcaGGu -3'
miRNA:   3'- aauaauCCCGCuu---CACGCUCGUGa--CC- -5'
5980 5' -51.5 NC_001806.1 + 34304 0.71 0.877593
Target:  5'- --uUUAGcGGCGggGggcgGCGcgccggacggGGCGCUGGa -3'
miRNA:   3'- aauAAUC-CCGCuuCa---CGC----------UCGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 34001 0.66 0.985256
Target:  5'- ----aGGGGCGggG-GCGuGgGCgGGg -3'
miRNA:   3'- aauaaUCCCGCuuCaCGCuCgUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 33652 0.67 0.976586
Target:  5'- ----gGGGGgGggGUgucGCGGGCcgucuGCUGGc -3'
miRNA:   3'- aauaaUCCCgCuuCA---CGCUCG-----UGACC- -5'
5980 5' -51.5 NC_001806.1 + 31365 0.77 0.563648
Target:  5'- uUUGUggggAGGGgGggGU-CGGGCGCUGGg -3'
miRNA:   3'- -AAUAa---UCCCgCuuCAcGCUCGUGACC- -5'
5980 5' -51.5 NC_001806.1 + 26829 0.67 0.97393
Target:  5'- -----cGGGCGggGaGgGGGCGCcGGa -3'
miRNA:   3'- aauaauCCCGCuuCaCgCUCGUGaCC- -5'
5980 5' -51.5 NC_001806.1 + 25919 0.67 0.967973
Target:  5'- -----cGGGCGgcGUGCGcGCGCgcggcGGg -3'
miRNA:   3'- aauaauCCCGCuuCACGCuCGUGa----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.