miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 105715 0.7 0.928866
Target:  5'- cGUCGGGgcGG-CAAGCCCuGCCauagCCa -3'
miRNA:   3'- -CAGCUCuuCCuGUUUGGGuUGGca--GG- -5'
5989 5' -51 NC_001806.1 + 104965 0.67 0.987937
Target:  5'- uGUUGGGGgcccuuccggAGGACAGACacauCGACCG-CCu -3'
miRNA:   3'- -CAGCUCU----------UCCUGUUUGg---GUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 97186 0.66 0.994713
Target:  5'- cGUCGAGGAGGugGAcgcgcGCUCGGuguacCCGUa- -3'
miRNA:   3'- -CAGCUCUUCCugUU-----UGGGUU-----GGCAgg -5'
5989 5' -51 NC_001806.1 + 94812 0.67 0.989384
Target:  5'- -gCGGGggGcGACGGGcagcCCCAcCCGUCg -3'
miRNA:   3'- caGCUCuuC-CUGUUU----GGGUuGGCAGg -5'
5989 5' -51 NC_001806.1 + 94344 0.69 0.967192
Target:  5'- --gGAGAccauGGGCcuGGCCCGACCcuGUCCg -3'
miRNA:   3'- cagCUCUu---CCUGu-UUGGGUUGG--CAGG- -5'
5989 5' -51 NC_001806.1 + 94063 0.66 0.991871
Target:  5'- cUCGGGcAGGuGCAGACCUAugUGUUUc -3'
miRNA:   3'- cAGCUCuUCC-UGUUUGGGUugGCAGG- -5'
5989 5' -51 NC_001806.1 + 93913 0.66 0.994713
Target:  5'- --aGAGggGGACcccgGGGCUCAGCCagacgCCg -3'
miRNA:   3'- cagCUCuuCCUG----UUUGGGUUGGca---GG- -5'
5989 5' -51 NC_001806.1 + 91274 0.67 0.989384
Target:  5'- -cCGAGguGGACGAcgccgGCCCGGCgGaCCc -3'
miRNA:   3'- caGCUCuuCCUGUU-----UGGGUUGgCaGG- -5'
5989 5' -51 NC_001806.1 + 91159 0.71 0.897584
Target:  5'- uUCGAGGgccAGGACAcggccgcGGCCCGcgccaacGCCGUCg -3'
miRNA:   3'- cAGCUCU---UCCUGU-------UUGGGU-------UGGCAGg -5'
5989 5' -51 NC_001806.1 + 90838 0.66 0.994713
Target:  5'- uUCGAGgcGGuCGuggGACCC-GCCG-CCg -3'
miRNA:   3'- cAGCUCuuCCuGU---UUGGGuUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 88411 0.68 0.977575
Target:  5'- uUUGAGAcgguaccagccgaaGGuGACGAACCCGggGuuGUCCa -3'
miRNA:   3'- cAGCUCU--------------UC-CUGUUUGGGU--UggCAGG- -5'
5989 5' -51 NC_001806.1 + 88061 0.71 0.923375
Target:  5'- -aCGGGcguGGGCAGGCCCcuGGCCG-CCa -3'
miRNA:   3'- caGCUCuu-CCUGUUUGGG--UUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 86085 0.7 0.939093
Target:  5'- cUCGcGGAGGGCGgccAGCCgcgCGACCGUCUc -3'
miRNA:   3'- cAGCuCUUCCUGU---UUGG---GUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 86027 0.71 0.911641
Target:  5'- -cCGGGGAGGGCAGGgCCGcggggggggcggGCuCGUCCc -3'
miRNA:   3'- caGCUCUUCCUGUUUgGGU------------UG-GCAGG- -5'
5989 5' -51 NC_001806.1 + 82422 0.66 0.995457
Target:  5'- --aGAGuAGGGGCccGCCUccCCGUCCc -3'
miRNA:   3'- cagCUC-UUCCUGuuUGGGuuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 82151 0.7 0.928866
Target:  5'- gGUCGccGAGGGAC-AGCCCcgUCGUCUc -3'
miRNA:   3'- -CAGCu-CUUCCUGuUUGGGuuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 77153 0.67 0.989384
Target:  5'- cUCGGGggGcGCGuGGCCCAACaCG-CCg -3'
miRNA:   3'- cAGCUCuuCcUGU-UUGGGUUG-GCaGG- -5'
5989 5' -51 NC_001806.1 + 74062 0.75 0.746208
Target:  5'- --gGAGGAGGuGCGGACCCAGgcCCGUCg -3'
miRNA:   3'- cagCUCUUCC-UGUUUGGGUU--GGCAGg -5'
5989 5' -51 NC_001806.1 + 73459 0.66 0.992928
Target:  5'- -cCGGGguGG-CcGGCCCGGCCG-CCg -3'
miRNA:   3'- caGCUCuuCCuGuUUGGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 73141 0.7 0.938606
Target:  5'- -gCGAGGAcGACGGGCCCAcgguuccGgCGUCCu -3'
miRNA:   3'- caGCUCUUcCUGUUUGGGU-------UgGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.