miRNA display CGI


Results 21 - 40 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 121511 0.7 0.648794
Target:  5'- aCCGGGaagCAGGGCCCGCCaucuGGGAUg -3'
miRNA:   3'- aGGCCCggaGUCUUGGGUGGg---CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 120103 0.68 0.728558
Target:  5'- cUCCGGGCC-CuGGGCcaggCCAUCCGGGccGCg -3'
miRNA:   3'- -AGGCCCGGaGuCUUG----GGUGGGCUU--UG- -5'
5990 3' -57.6 NC_001806.1 + 119594 0.67 0.811827
Target:  5'- -gCGGGUCU-GGAGCCC-CCCGGc-- -3'
miRNA:   3'- agGCCCGGAgUCUUGGGuGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 118492 0.67 0.811827
Target:  5'- gUCCuGGCCUCGGAuUCC-CuaGAGACa -3'
miRNA:   3'- -AGGcCCGGAGUCUuGGGuGggCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 117692 0.67 0.776047
Target:  5'- cUCgGGGCC-C-GAGCCCGCgucggcccccuCCGAGGCc -3'
miRNA:   3'- -AGgCCCGGaGuCUUGGGUG-----------GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 116572 0.69 0.689047
Target:  5'- aUCCGGGaCCU--GAACCCcaGCCCcaGAAACc -3'
miRNA:   3'- -AGGCCC-GGAguCUUGGG--UGGG--CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 116362 0.66 0.852914
Target:  5'- -gUGGGCCUC---ACCCACgCCGgcACc -3'
miRNA:   3'- agGCCCGGAGucuUGGGUG-GGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 115859 0.71 0.598239
Target:  5'- gCCGGGCCcCAuaaAACCCAagCCGGGACu -3'
miRNA:   3'- aGGCCCGGaGUc--UUGGGUg-GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 115322 0.67 0.820394
Target:  5'- cCCGGGCCuUCGcGGCCacggccaACCCGuGGGCg -3'
miRNA:   3'- aGGCCCGG-AGUcUUGGg------UGGGC-UUUG- -5'
5990 3' -57.6 NC_001806.1 + 114840 0.67 0.794223
Target:  5'- cCUGGGCCagcucCAGGugGCCCGgCaCGAAACu -3'
miRNA:   3'- aGGCCCGGa----GUCU--UGGGUgG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 111998 0.69 0.689047
Target:  5'- gCCGGGCC-CuGAACgCCGCCUucAGCc -3'
miRNA:   3'- aGGCCCGGaGuCUUG-GGUGGGcuUUG- -5'
5990 3' -57.6 NC_001806.1 + 111296 0.67 0.811827
Target:  5'- aCCaGGGCCaUCuuGAAUgCACCCGucGCg -3'
miRNA:   3'- aGG-CCCGG-AGu-CUUGgGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 110582 0.68 0.71878
Target:  5'- cCCGGGUgucuuugauCUCGGGAUCCugCUGAcguaAGCg -3'
miRNA:   3'- aGGCCCG---------GAGUCUUGGGugGGCU----UUG- -5'
5990 3' -57.6 NC_001806.1 + 109237 0.66 0.828794
Target:  5'- gCCGGGCggggCGGAAUCCuggGCCCcGGGCa -3'
miRNA:   3'- aGGCCCGga--GUCUUGGG---UGGGcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 108049 0.68 0.766766
Target:  5'- gCCGGGCCgaCGGAGggCGCCCcAAGCg -3'
miRNA:   3'- aGGCCCGGa-GUCUUggGUGGGcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 106243 0.68 0.717798
Target:  5'- cCCGGGCCUgGGuAAcguuuucggccguCCCugacCCCGAGGCc -3'
miRNA:   3'- aGGCCCGGAgUC-UU-------------GGGu---GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 104450 0.67 0.820394
Target:  5'- gCCGGcaacaaaaaGCCaCGGAAgUCCGCCUGGAGCa -3'
miRNA:   3'- aGGCC---------CGGaGUCUU-GGGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 101482 0.71 0.598239
Target:  5'- gCCGGGCCgggacUGGAGCCCGCCguuuaCGggGu -3'
miRNA:   3'- aGGCCCGGa----GUCUUGGGUGG-----GCuuUg -5'
5990 3' -57.6 NC_001806.1 + 100739 0.66 0.852914
Target:  5'- gCCGGGCgCcCAGGugC-GCCCGGAcaGCg -3'
miRNA:   3'- aGGCCCG-GaGUCUugGgUGGGCUU--UG- -5'
5990 3' -57.6 NC_001806.1 + 100104 0.66 0.860572
Target:  5'- cCCGcGGCCggCuGAccGCCCGCCUGGc-- -3'
miRNA:   3'- aGGC-CCGGa-GuCU--UGGGUGGGCUuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.