Results 1 - 20 of 521 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6346 | 3' | -60.6 | NC_001847.1 | + | 92733 | 0.66 | 0.744835 |
Target: 5'- cCGgCGCCGUCGUCa--GCGcGCGCGa -3' miRNA: 3'- -GCaGUGGCGGCAGaagCGCcCGCGCg -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 5192 | 0.66 | 0.744835 |
Target: 5'- --aCAgCGCCG-CgagCGCGGcaaGCGCGCc -3' miRNA: 3'- gcaGUgGCGGCaGaa-GCGCC---CGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 81172 | 0.66 | 0.744835 |
Target: 5'- cCG-CGCCGCuCGgagggC-UCGCGgcggcgccagccGGCGCGCg -3' miRNA: 3'- -GCaGUGGCG-GCa----GaAGCGC------------CCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 40199 | 0.66 | 0.744835 |
Target: 5'- ---gGCCGCCGaugCggUCGUGGGCGUc- -3' miRNA: 3'- gcagUGGCGGCa--Ga-AGCGCCCGCGcg -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 15557 | 0.66 | 0.744835 |
Target: 5'- gCG-CGCgGCCGUCgggcCGCGGcCGcCGCu -3' miRNA: 3'- -GCaGUGgCGGCAGaa--GCGCCcGC-GCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 28329 | 0.66 | 0.744835 |
Target: 5'- gCGU-GCCGCuCGcCg--GCGGGCaGCGCg -3' miRNA: 3'- -GCAgUGGCG-GCaGaagCGCCCG-CGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 56062 | 0.66 | 0.744835 |
Target: 5'- aGgCGCCGCUGaagcCUgCGCGGcugaGCGCGCc -3' miRNA: 3'- gCaGUGGCGGCa---GAaGCGCC----CGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 77704 | 0.66 | 0.744835 |
Target: 5'- gCGUgCGCgCGCgCG-CUggugCGCGcuuGGCGCGCg -3' miRNA: 3'- -GCA-GUG-GCG-GCaGAa---GCGC---CCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 48147 | 0.66 | 0.744835 |
Target: 5'- gGUaACCGCCGg----GCcGGCGCGCg -3' miRNA: 3'- gCAgUGGCGGCagaagCGcCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 97594 | 0.66 | 0.744835 |
Target: 5'- gCGUCuuccgaaggGCCGcCCGUCgcgugcaccgUCGaGGGUGCGUc -3' miRNA: 3'- -GCAG---------UGGC-GGCAGa---------AGCgCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 11526 | 0.66 | 0.744835 |
Target: 5'- aCGUaGCCGCCGggugCUgcguUCGCgucuGGaGUGCGCc -3' miRNA: 3'- -GCAgUGGCGGCa---GA----AGCG----CC-CGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 34092 | 0.66 | 0.744835 |
Target: 5'- cCGggGCCgGCC-UCg--GCGGGUGCGCa -3' miRNA: 3'- -GCagUGG-CGGcAGaagCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 48415 | 0.66 | 0.744835 |
Target: 5'- --aCAUCGCCcUC--CGCGGGcCGCGUg -3' miRNA: 3'- gcaGUGGCGGcAGaaGCGCCC-GCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 60361 | 0.66 | 0.744835 |
Target: 5'- cCGUCGaacgUGCacacCUUCGCcaggGGGCGCGCg -3' miRNA: 3'- -GCAGUg---GCGgca-GAAGCG----CCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 71695 | 0.66 | 0.744835 |
Target: 5'- --cCGCCGCguccgCGUCUgCGCGG-UGCGCc -3' miRNA: 3'- gcaGUGGCG-----GCAGAaGCGCCcGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 92187 | 0.66 | 0.744835 |
Target: 5'- --aCGCCGCCGUCcgUGCGGaaGCa- -3' miRNA: 3'- gcaGUGGCGGCAGaaGCGCCcgCGcg -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 128204 | 0.66 | 0.744835 |
Target: 5'- cCG-CGCCuggcCCGUCUUCGUGuGcaccuucaacaGCGCGCa -3' miRNA: 3'- -GCaGUGGc---GGCAGAAGCGC-C-----------CGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 88241 | 0.66 | 0.735448 |
Target: 5'- cCGagGCCGgCG-CggCGCGGG-GCGCc -3' miRNA: 3'- -GCagUGGCgGCaGaaGCGCCCgCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 119374 | 0.66 | 0.735448 |
Target: 5'- -cUUGCCGCCGgCgaaaGCGGGC-CGCc -3' miRNA: 3'- gcAGUGGCGGCaGaag-CGCCCGcGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 83972 | 0.66 | 0.735448 |
Target: 5'- cCGUCGCCgggcaaacgGCCGUCgaguaCGGGUccaGCGCc -3' miRNA: 3'- -GCAGUGG---------CGGCAGaagc-GCCCG---CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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