miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 3' -55.4 NC_001847.1 + 117939 0.66 0.909235
Target:  5'- cGGuCGACGACUccGGGCuCUUUUCGcGCa- -3'
miRNA:   3'- -UC-GCUGCUGAa-CUCG-GAGAAGC-CGag -5'
6347 3' -55.4 NC_001847.1 + 56898 0.66 0.909235
Target:  5'- cGCGGCGACgucGGCCUCcagGGCg- -3'
miRNA:   3'- uCGCUGCUGaacUCGGAGaagCCGag -5'
6347 3' -55.4 NC_001847.1 + 13237 0.66 0.909235
Target:  5'- cGCGAUGGCcagcgGGGCCacgCgggCGGUUCg -3'
miRNA:   3'- uCGCUGCUGaa---CUCGGa--Gaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 105190 0.66 0.902945
Target:  5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3'
miRNA:   3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 5186 0.66 0.902945
Target:  5'- cGCGGCG-CggGAGaagcCCUCgcCGGCUCu -3'
miRNA:   3'- uCGCUGCuGaaCUC----GGAGaaGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 13712 0.66 0.902945
Target:  5'- cGGCGGCGGuc-GGGCCgCUcaaCGGCUCc -3'
miRNA:   3'- -UCGCUGCUgaaCUCGGaGAa--GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 45426 0.66 0.902945
Target:  5'- gAGCGAaGGCUUGAGCCcagggCgcccgucgCGGCg- -3'
miRNA:   3'- -UCGCUgCUGAACUCGGa----Gaa------GCCGag -5'
6347 3' -55.4 NC_001847.1 + 2377 0.66 0.902945
Target:  5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3'
miRNA:   3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 107999 0.66 0.902945
Target:  5'- cGCGGCG-CggGAGaagcCCUCgcCGGCUCu -3'
miRNA:   3'- uCGCUGCuGaaCUC----GGAGaaGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 81155 0.66 0.896412
Target:  5'- aAGCGACGACU--GGCCcgccgcgccgcUCggagGGCUCg -3'
miRNA:   3'- -UCGCUGCUGAacUCGG-----------AGaag-CCGAG- -5'
6347 3' -55.4 NC_001847.1 + 76603 0.66 0.896412
Target:  5'- uGGCGGCGGCgaagaccgcgGcGGCCUCUUCGuGUc- -3'
miRNA:   3'- -UCGCUGCUGaa--------C-UCGGAGAAGC-CGag -5'
6347 3' -55.4 NC_001847.1 + 16609 0.66 0.896412
Target:  5'- cGGCGAUcaGACgcUGAGCa---UCGGCUCg -3'
miRNA:   3'- -UCGCUG--CUGa-ACUCGgagaAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 95284 0.66 0.889641
Target:  5'- cGCGugGACga-AGCCUaccggCGGCUg -3'
miRNA:   3'- uCGCugCUGaacUCGGAgaa--GCCGAg -5'
6347 3' -55.4 NC_001847.1 + 2669 0.66 0.889641
Target:  5'- -cCGGCGGCUc-GGCCggCaUCGGCUCg -3'
miRNA:   3'- ucGCUGCUGAacUCGGa-GaAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 107646 0.66 0.882635
Target:  5'- cGGCGGCGGCcgaGGCCUCUgccgccgaagcCGGCg- -3'
miRNA:   3'- -UCGCUGCUGaacUCGGAGAa----------GCCGag -5'
6347 3' -55.4 NC_001847.1 + 80746 0.66 0.875398
Target:  5'- cGCGGCGGCgcccGCCUCgcccgCGGC-Cg -3'
miRNA:   3'- uCGCUGCUGaacuCGGAGaa---GCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 102315 0.67 0.867936
Target:  5'- cGGCGGCcACgcGGGCCUCg-CGcGCUCg -3'
miRNA:   3'- -UCGCUGcUGaaCUCGGAGaaGC-CGAG- -5'
6347 3' -55.4 NC_001847.1 + 96929 0.67 0.867936
Target:  5'- aGGCGcGCGGCccGGGCCUCcgcgggCGGCa- -3'
miRNA:   3'- -UCGC-UGCUGaaCUCGGAGaa----GCCGag -5'
6347 3' -55.4 NC_001847.1 + 92486 0.67 0.867178
Target:  5'- cGCGGCGGC---GGCCUCUUCgacaaagGGCa- -3'
miRNA:   3'- uCGCUGCUGaacUCGGAGAAG-------CCGag -5'
6347 3' -55.4 NC_001847.1 + 104542 0.67 0.860254
Target:  5'- cGCGGCGGCcccgGGGCCgCUacgCGGCg- -3'
miRNA:   3'- uCGCUGCUGaa--CUCGGaGAa--GCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.