Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6347 | 3' | -55.4 | NC_001847.1 | + | 56898 | 0.66 | 0.909235 |
Target: 5'- cGCGGCGACgucGGCCUCcagGGCg- -3' miRNA: 3'- uCGCUGCUGaacUCGGAGaagCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 13237 | 0.66 | 0.909235 |
Target: 5'- cGCGAUGGCcagcgGGGCCacgCgggCGGUUCg -3' miRNA: 3'- uCGCUGCUGaa---CUCGGa--Gaa-GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 117939 | 0.66 | 0.909235 |
Target: 5'- cGGuCGACGACUccGGGCuCUUUUCGcGCa- -3' miRNA: 3'- -UC-GCUGCUGAa-CUCG-GAGAAGC-CGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 2377 | 0.66 | 0.902945 |
Target: 5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3' miRNA: 3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 45426 | 0.66 | 0.902945 |
Target: 5'- gAGCGAaGGCUUGAGCCcagggCgcccgucgCGGCg- -3' miRNA: 3'- -UCGCUgCUGAACUCGGa----Gaa------GCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 13712 | 0.66 | 0.902945 |
Target: 5'- cGGCGGCGGuc-GGGCCgCUcaaCGGCUCc -3' miRNA: 3'- -UCGCUGCUgaaCUCGGaGAa--GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 5186 | 0.66 | 0.902945 |
Target: 5'- cGCGGCG-CggGAGaagcCCUCgcCGGCUCu -3' miRNA: 3'- uCGCUGCuGaaCUC----GGAGaaGCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 107999 | 0.66 | 0.902945 |
Target: 5'- cGCGGCG-CggGAGaagcCCUCgcCGGCUCu -3' miRNA: 3'- uCGCUGCuGaaCUC----GGAGaaGCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 105190 | 0.66 | 0.902945 |
Target: 5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3' miRNA: 3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 16609 | 0.66 | 0.896412 |
Target: 5'- cGGCGAUcaGACgcUGAGCa---UCGGCUCg -3' miRNA: 3'- -UCGCUG--CUGa-ACUCGgagaAGCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 76603 | 0.66 | 0.896412 |
Target: 5'- uGGCGGCGGCgaagaccgcgGcGGCCUCUUCGuGUc- -3' miRNA: 3'- -UCGCUGCUGaa--------C-UCGGAGAAGC-CGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 81155 | 0.66 | 0.896412 |
Target: 5'- aAGCGACGACU--GGCCcgccgcgccgcUCggagGGCUCg -3' miRNA: 3'- -UCGCUGCUGAacUCGG-----------AGaag-CCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 95284 | 0.66 | 0.889641 |
Target: 5'- cGCGugGACga-AGCCUaccggCGGCUg -3' miRNA: 3'- uCGCugCUGaacUCGGAgaa--GCCGAg -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 2669 | 0.66 | 0.889641 |
Target: 5'- -cCGGCGGCUc-GGCCggCaUCGGCUCg -3' miRNA: 3'- ucGCUGCUGAacUCGGa-GaAGCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 107646 | 0.66 | 0.882635 |
Target: 5'- cGGCGGCGGCcgaGGCCUCUgccgccgaagcCGGCg- -3' miRNA: 3'- -UCGCUGCUGaacUCGGAGAa----------GCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 80746 | 0.66 | 0.875398 |
Target: 5'- cGCGGCGGCgcccGCCUCgcccgCGGC-Cg -3' miRNA: 3'- uCGCUGCUGaacuCGGAGaa---GCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 102315 | 0.67 | 0.867936 |
Target: 5'- cGGCGGCcACgcGGGCCUCg-CGcGCUCg -3' miRNA: 3'- -UCGCUGcUGaaCUCGGAGaaGC-CGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 96929 | 0.67 | 0.867936 |
Target: 5'- aGGCGcGCGGCccGGGCCUCcgcgggCGGCa- -3' miRNA: 3'- -UCGC-UGCUGaaCUCGGAGaa----GCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 92486 | 0.67 | 0.867178 |
Target: 5'- cGCGGCGGC---GGCCUCUUCgacaaagGGCa- -3' miRNA: 3'- uCGCUGCUGaacUCGGAGAAG-------CCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 104542 | 0.67 | 0.860254 |
Target: 5'- cGCGGCGGCcccgGGGCCgCUacgCGGCg- -3' miRNA: 3'- uCGCUGCUGaa--CUCGGaGAa--GCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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