miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 46530 0.66 0.826801
Target:  5'- cGGggGGCGGCGGcGGCGCg--CGCg-- -3'
miRNA:   3'- -UCuuCUGCUGCU-CCGCGggaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 104888 0.66 0.826801
Target:  5'- cGguGGCGGCGA-GCGCCC-CGCg-- -3'
miRNA:   3'- uCuuCUGCUGCUcCGCGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 69055 0.66 0.826801
Target:  5'- cGggGGCGACGuGGacuuucuaaCGCgCUCGCcgCGu -3'
miRNA:   3'- uCuuCUGCUGCuCC---------GCGgGAGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 8826 0.66 0.826801
Target:  5'- aAGGAGAgauccCGACGGGGCuGUuucaUCUCGCUUu -3'
miRNA:   3'- -UCUUCU-----GCUGCUCCG-CG----GGAGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 107684 0.66 0.826801
Target:  5'- gGGggGGCGGCG-GGCagcggcaggGCCCcCGCg-- -3'
miRNA:   3'- -UCuuCUGCUGCuCCG---------CGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 78544 0.66 0.826801
Target:  5'- cGGAAGACG-CGAgucccGGCGCUgcCGUUCGc -3'
miRNA:   3'- -UCUUCUGCuGCU-----CCGCGGgaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 134289 0.66 0.826801
Target:  5'- ----cGCGugGAGGUGCUCUC-CUCc -3'
miRNA:   3'- ucuucUGCugCUCCGCGGGAGcGAGc -5'
6347 5' -58.3 NC_001847.1 + 79599 0.66 0.826801
Target:  5'- cGggGGCGcCgGGGGCGUUgUCGC-CGg -3'
miRNA:   3'- uCuuCUGCuG-CUCCGCGGgAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 99567 0.66 0.826801
Target:  5'- uGAGGuuGGCcagcccGGCGCCCUCGUcgCGg -3'
miRNA:   3'- uCUUCugCUGcu----CCGCGGGAGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 2075 0.66 0.826801
Target:  5'- cGguGGCGGCGA-GCGCCC-CGCg-- -3'
miRNA:   3'- uCuuCUGCUGCUcCGCGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 4871 0.66 0.826801
Target:  5'- gGGggGGCGGCG-GGCagcggcaggGCCCcCGCg-- -3'
miRNA:   3'- -UCuuCUGCUGCuCCG---------CGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 31476 0.66 0.826801
Target:  5'- ----cGCGugGAGGUGCUCUC-CUCc -3'
miRNA:   3'- ucuucUGCugCUCCGCGGGAGcGAGc -5'
6347 5' -58.3 NC_001847.1 + 53063 0.66 0.826801
Target:  5'- cGgcGACGGCGucagacGCGCCgUCGCUg- -3'
miRNA:   3'- uCuuCUGCUGCuc----CGCGGgAGCGAgc -5'
6347 5' -58.3 NC_001847.1 + 87392 0.66 0.821775
Target:  5'- cGcGGACaaguacuugcgcgcgGGCGGGGCcccGCCCgccgCGCUCGa -3'
miRNA:   3'- uCuUCUG---------------CUGCUCCG---CGGGa---GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 104445 0.66 0.81839
Target:  5'- cAGGAG-CGcCG-GGCuGCCCUCGuCUCc -3'
miRNA:   3'- -UCUUCuGCuGCuCCG-CGGGAGC-GAGc -5'
6347 5' -58.3 NC_001847.1 + 129258 0.66 0.81839
Target:  5'- ---cGACGGCGcGGcCGCCCUgCGCgcagCGc -3'
miRNA:   3'- ucuuCUGCUGCuCC-GCGGGA-GCGa---GC- -5'
6347 5' -58.3 NC_001847.1 + 37565 0.66 0.81839
Target:  5'- cGGAAGACG-CGGcGGCGCUggcCGCUgCGg -3'
miRNA:   3'- -UCUUCUGCuGCU-CCGCGGga-GCGA-GC- -5'
6347 5' -58.3 NC_001847.1 + 53933 0.66 0.81839
Target:  5'- cGgcGACGgcggcucugugcGCGAGGCGgCCgccucugUGCUCGa -3'
miRNA:   3'- uCuuCUGC------------UGCUCCGCgGGa------GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 74686 0.66 0.81839
Target:  5'- cGGcAGGACGGCGGccGGCGCUUUUGCc-- -3'
miRNA:   3'- -UC-UUCUGCUGCU--CCGCGGGAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 15828 0.66 0.81839
Target:  5'- cGAAGGCGaggGCGAauucGCGCCUUUGCccUCGg -3'
miRNA:   3'- uCUUCUGC---UGCUc---CGCGGGAGCG--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.