Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 132116 | 1.11 | 0.001766 |
Target: 5'- gGCGCGCAGACGUGACCGCCCCUAUUGg -3' miRNA: 3'- -CGCGCGUCUGCACUGGCGGGGAUAAC- -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 88367 | 0.78 | 0.256795 |
Target: 5'- gGCGCGCGGGCGcggcgGACCGgCCCCg---- -3' miRNA: 3'- -CGCGCGUCUGCa----CUGGC-GGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 61275 | 0.77 | 0.282334 |
Target: 5'- cGCGCGCGGGCGccgcGCCGCCgCCUAg-- -3' miRNA: 3'- -CGCGCGUCUGCac--UGGCGG-GGAUaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 48937 | 0.76 | 0.331787 |
Target: 5'- cGgGCGCAGGCGcgcgacugGACCGCCCCc---- -3' miRNA: 3'- -CgCGCGUCUGCa-------CUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 33654 | 0.75 | 0.362785 |
Target: 5'- cGCGCGCGcGCGUGGCCGCggCCCg---- -3' miRNA: 3'- -CGCGCGUcUGCACUGGCG--GGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 103462 | 0.75 | 0.362785 |
Target: 5'- -aGCGCAGACacGGCCGCCCUUAg-- -3' miRNA: 3'- cgCGCGUCUGcaCUGGCGGGGAUaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 61023 | 0.75 | 0.395737 |
Target: 5'- cGCGCGUcacauccccGGGCGcGGCCGCCCCg---- -3' miRNA: 3'- -CGCGCG---------UCUGCaCUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 41511 | 0.75 | 0.379021 |
Target: 5'- aGCGUGCAGACGUccgcGGCCGCgCCg---- -3' miRNA: 3'- -CGCGCGUCUGCA----CUGGCGgGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 85090 | 0.74 | 0.457821 |
Target: 5'- cGCGCGCGGACccgcGGCCGCCaCCg---- -3' miRNA: 3'- -CGCGCGUCUGca--CUGGCGG-GGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 88547 | 0.74 | 0.430558 |
Target: 5'- uGUGCGCGuGGCGUGACCGCgCUCg---- -3' miRNA: 3'- -CGCGCGU-CUGCACUGGCG-GGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 104100 | 0.74 | 0.448629 |
Target: 5'- gGCgGCGCGGugGcUGGCCGCCUCg---- -3' miRNA: 3'- -CG-CGCGUCugC-ACUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 110813 | 0.74 | 0.412921 |
Target: 5'- cGCGCGCGG-CGUGGCgCGCCaCCg---- -3' miRNA: 3'- -CGCGCGUCuGCACUG-GCGG-GGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 129397 | 0.74 | 0.439541 |
Target: 5'- gGCGCGcCGGACGgcgGugCGuCCCCUGa-- -3' miRNA: 3'- -CGCGC-GUCUGCa--CugGC-GGGGAUaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 74489 | 0.74 | 0.412921 |
Target: 5'- aGgGCGCGGACGcGGCCGCgcgcaCCCUcgUGc -3' miRNA: 3'- -CgCGCGUCUGCaCUGGCG-----GGGAuaAC- -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 1287 | 0.74 | 0.448629 |
Target: 5'- gGCgGCGCGGugGcUGGCCGCCUCg---- -3' miRNA: 3'- -CG-CGCGUCugC-ACUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 117403 | 0.73 | 0.505203 |
Target: 5'- aGCGCGaGGcCGUGGCCGCCUCg---- -3' miRNA: 3'- -CGCGCgUCuGCACUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 14906 | 0.73 | 0.48598 |
Target: 5'- cGCGCGCAGGCc-GACUGCCUCg---- -3' miRNA: 3'- -CGCGCGUCUGcaCUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 106956 | 0.73 | 0.495549 |
Target: 5'- gGCGCGCAGGCGcgcGGCCGCCag-GUa- -3' miRNA: 3'- -CGCGCGUCUGCa--CUGGCGGggaUAac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 93430 | 0.72 | 0.534624 |
Target: 5'- uGgGCGCAGACG-GACUGCgacCCCUAc-- -3' miRNA: 3'- -CgCGCGUCUGCaCUGGCG---GGGAUaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 77116 | 0.72 | 0.564627 |
Target: 5'- uCGCcaGCAG-CG-GGCCGCCCUUGUUGc -3' miRNA: 3'- cGCG--CGUCuGCaCUGGCGGGGAUAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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