Results 1 - 20 of 1036 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6349 | 3' | -59 | NC_001847.1 | + | 79076 | 0.65 | 0.780633 |
Target: 5'- cCGGGCGCGUGcgacgugugcccguGCgCCGcgccgugccugugGAAgAAGGCCc -3' miRNA: 3'- uGCCCGCGCGC--------------CG-GGU-------------UUUgUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 117921 | 0.65 | 0.780633 |
Target: 5'- gACGcGGUGUGgGGCaacguaagcgccgCAGAGCuGGGCCu -3' miRNA: 3'- -UGC-CCGCGCgCCGg------------GUUUUGuUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 51982 | 0.66 | 0.778799 |
Target: 5'- cUGGGUGCGCcggcgcaucgcggacGcGCCCGAcgccGCGGcGGCCg -3' miRNA: 3'- uGCCCGCGCG---------------C-CGGGUUu---UGUU-CCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 4389 | 0.66 | 0.775115 |
Target: 5'- cGCGcGCGcCGCGGCCCA-GGCGcuGUCc -3' miRNA: 3'- -UGCcCGC-GCGCCGGGUuUUGUucCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 53022 | 0.66 | 0.775115 |
Target: 5'- gGCGGccgcuGCGCGCucgggccucGGCUCcGAGCcuGGCCc -3' miRNA: 3'- -UGCC-----CGCGCG---------CCGGGuUUUGuuCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 92147 | 0.66 | 0.775115 |
Target: 5'- cCGucCGCGgGGCCCGccGACAgcgaacccGGGCCg -3' miRNA: 3'- uGCccGCGCgCCGGGUu-UUGU--------UCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 110887 | 0.66 | 0.775115 |
Target: 5'- aGCGGGgGgGCcuGUCCAccacGGCGAGGCg -3' miRNA: 3'- -UGCCCgCgCGc-CGGGUu---UUGUUCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 11307 | 0.66 | 0.775115 |
Target: 5'- gAUGGGCGC---GCCCGc--CGAGGCCn -3' miRNA: 3'- -UGCCCGCGcgcCGGGUuuuGUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 32936 | 0.66 | 0.775115 |
Target: 5'- gACGacccGCGCGCGguGCCCGcGGACAGcgcgguGGCCg -3' miRNA: 3'- -UGCc---CGCGCGC--CGGGU-UUUGUU------CCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 56798 | 0.66 | 0.775115 |
Target: 5'- -gGGGCuguucgccGcCGCGGCgCCcAAGCcGGGCCc -3' miRNA: 3'- ugCCCG--------C-GCGCCG-GGuUUUGuUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 8074 | 0.66 | 0.775115 |
Target: 5'- aGCGGGgGgGCcuGUCCAccacGGCGAGGCg -3' miRNA: 3'- -UGCCCgCgCGc-CGGGUu---UUGUUCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 116421 | 0.66 | 0.775115 |
Target: 5'- cCGGGcCGCGCgcuugGGCUCGAgGGCGguGGGCg -3' miRNA: 3'- uGCCC-GCGCG-----CCGGGUU-UUGU--UCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 47641 | 0.66 | 0.775115 |
Target: 5'- gGCGGGCaCGUGcaagcaGCCgCcGAGCAcGGCCa -3' miRNA: 3'- -UGCCCGcGCGC------CGG-GuUUUGUuCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 47825 | 0.66 | 0.775115 |
Target: 5'- gACGGGaUGCcgGCGGCCaaugcgcGCAAaucGGCCg -3' miRNA: 3'- -UGCCC-GCG--CGCCGGguuu---UGUU---CCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 83721 | 0.66 | 0.775115 |
Target: 5'- cGCGcGCGgGCGGCuCCGucuGCGccGCCg -3' miRNA: 3'- -UGCcCGCgCGCCG-GGUuu-UGUucCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 115037 | 0.66 | 0.775115 |
Target: 5'- -aGGGCG-GCGaGUCCGGGGCAGaGCUc -3' miRNA: 3'- ugCCCGCgCGC-CGGGUUUUGUUcCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 58479 | 0.66 | 0.775115 |
Target: 5'- aACGGGUcgaaaaagGCGCccuccccGCCCucGGGCAGGGCg -3' miRNA: 3'- -UGCCCG--------CGCGc------CGGGu-UUUGUUCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 74273 | 0.66 | 0.775115 |
Target: 5'- cCGGGCGCgGCcGCCCucgcgcuGGACGcccuGGcGCCg -3' miRNA: 3'- uGCCCGCG-CGcCGGGu------UUUGU----UC-CGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 82734 | 0.66 | 0.775115 |
Target: 5'- cGCGGGCccaGC-GCCUGGAGCAcGGCg -3' miRNA: 3'- -UGCCCGcg-CGcCGGGUUUUGUuCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 97535 | 0.66 | 0.775115 |
Target: 5'- uCGGGCaaaagaGCGCGGgCCGGcccccGGCCg -3' miRNA: 3'- uGCCCG------CGCGCCgGGUUuuguuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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