miRNA display CGI


Results 61 - 80 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 130765 0.69 0.556166
Target:  5'- cCGcGGCGCGCGcGCUCGcggucgcGGugGAGGCg -3'
miRNA:   3'- uGC-CCGCGCGC-CGGGU-------UUugUUCCGg -5'
6349 3' -59 NC_001847.1 + 130707 0.66 0.765821
Target:  5'- cGCGGaGUGCGCcgaGGCCgAGggGGCgGAGGCg -3'
miRNA:   3'- -UGCC-CGCGCG---CCGGgUU--UUG-UUCCGg -5'
6349 3' -59 NC_001847.1 + 130492 0.73 0.382191
Target:  5'- gACGcGGCGCGuCGGgCUGAGGCGcgcgagcgccggcGGGCCg -3'
miRNA:   3'- -UGC-CCGCGC-GCCgGGUUUUGU-------------UCCGG- -5'
6349 3' -59 NC_001847.1 + 130184 0.76 0.226208
Target:  5'- cGCGGGCGCcCGGCCUgaaGAGAC-GGGCg -3'
miRNA:   3'- -UGCCCGCGcGCCGGG---UUUUGuUCCGg -5'
6349 3' -59 NC_001847.1 + 129743 0.68 0.647757
Target:  5'- cACuGaGCGCGCGGCCUgu-GCcgccGGCCg -3'
miRNA:   3'- -UGcC-CGCGCGCCGGGuuuUGuu--CCGG- -5'
6349 3' -59 NC_001847.1 + 129459 0.66 0.737275
Target:  5'- cCGGGUcuGgGCGGCCCc-GGCc-GGCCc -3'
miRNA:   3'- uGCCCG--CgCGCCGGGuuUUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 129329 0.83 0.081772
Target:  5'- cCGGGCGCGgGGCCgGGGGCGuucGGCCa -3'
miRNA:   3'- uGCCCGCGCgCCGGgUUUUGUu--CCGG- -5'
6349 3' -59 NC_001847.1 + 129301 0.69 0.567108
Target:  5'- -gGGGCGgGCcuGGUgCAAGGCG-GGCCu -3'
miRNA:   3'- ugCCCGCgCG--CCGgGUUUUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 128813 0.78 0.176969
Target:  5'- gGCGGGCGCGCaGGCgcgcaCAAAA-AGGGCCa -3'
miRNA:   3'- -UGCCCGCGCG-CCGg----GUUUUgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 128450 0.68 0.647757
Target:  5'- uCGGcccuGCGCGCGcGCCCG--GCc-GGCCg -3'
miRNA:   3'- uGCC----CGCGCGC-CGGGUuuUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 128280 0.69 0.567108
Target:  5'- ---aGCGCaagGCGGgCCAAAGCAAGcGCCg -3'
miRNA:   3'- ugccCGCG---CGCCgGGUUUUGUUC-CGG- -5'
6349 3' -59 NC_001847.1 + 128245 0.75 0.279359
Target:  5'- -aGGGCGCGCGcGCgcucgCCGAcgcacugcuccucGGCAAGGCCc -3'
miRNA:   3'- ugCCCGCGCGC-CG-----GGUU-------------UUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 127941 0.69 0.571101
Target:  5'- aGCGGGCG-GCGGCcgcggcugccuaaagCCGAAGCGgaugaaccgcccGGGCg -3'
miRNA:   3'- -UGCCCGCgCGCCG---------------GGUUUUGU------------UCCGg -5'
6349 3' -59 NC_001847.1 + 127360 0.73 0.374871
Target:  5'- -gGGGCgGCGgGGCCCGAGccucgGCAccaacGGCCg -3'
miRNA:   3'- ugCCCG-CGCgCCGGGUUU-----UGUu----CCGG- -5'
6349 3' -59 NC_001847.1 + 127145 0.73 0.374871
Target:  5'- cGCGGGgGCGauGUCCAAGugGaggggGGGCCc -3'
miRNA:   3'- -UGCCCgCGCgcCGGGUUUugU-----UCCGG- -5'
6349 3' -59 NC_001847.1 + 127095 0.72 0.391267
Target:  5'- cGCGGGcCGCGCGGCUUuggguccACcGGGCUg -3'
miRNA:   3'- -UGCCC-GCGCGCCGGGuuu----UGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 127009 0.69 0.5741
Target:  5'- cGCGaGGCuCGuCGGCCCGcccgccccgcgguuGuACGGGGCCa -3'
miRNA:   3'- -UGC-CCGcGC-GCCGGGU--------------UuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 126914 0.71 0.461303
Target:  5'- aGCuGGCGCG-GGuCCCAGGGCucgcacucGGGCCa -3'
miRNA:   3'- -UGcCCGCGCgCC-GGGUUUUGu-------UCCGG- -5'
6349 3' -59 NC_001847.1 + 126545 0.69 0.577102
Target:  5'- cCGGccgaGCGCcGCCCcuGGCGGGGCCu -3'
miRNA:   3'- uGCCcg--CGCGcCGGGuuUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 126504 0.68 0.617398
Target:  5'- cUGGGCGCccgaguccgcaGCGGCCgCucccccGGCGGGGCUu -3'
miRNA:   3'- uGCCCGCG-----------CGCCGG-Guu----UUGUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.