miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 14338 0.66 0.89077
Target:  5'- -gGC-CGGGCGUGGUgGCGgCGcCUGCg -3'
miRNA:   3'- cgUGcGCCUGUACUAgUGC-GC-GACGa -5'
6350 3' -55.5 NC_001847.1 + 105766 0.66 0.884541
Target:  5'- cGCGCGCGG-CAgcuccggccgcccgcGGUCGC-CGCUGUUu -3'
miRNA:   3'- -CGUGCGCCuGUa--------------CUAGUGcGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 98726 0.67 0.876676
Target:  5'- gGCGCGCGucGCAgGGUCuGCGCGCgagUGCa -3'
miRNA:   3'- -CGUGCGCc-UGUaCUAG-UGCGCG---ACGa -5'
6350 3' -55.5 NC_001847.1 + 30740 0.67 0.876676
Target:  5'- cGCGCGCuGGCccGAgcgGCGCGCUgGCg -3'
miRNA:   3'- -CGUGCGcCUGuaCUag-UGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 84143 0.67 0.876676
Target:  5'- aGCugGCGuGGucCGUaAUCGCGCGCUcgaGCUg -3'
miRNA:   3'- -CGugCGC-CU--GUAcUAGUGCGCGA---CGA- -5'
6350 3' -55.5 NC_001847.1 + 59373 0.67 0.876676
Target:  5'- aGCcCGCGGcCGUGuUCAccCGCGCgGCg -3'
miRNA:   3'- -CGuGCGCCuGUACuAGU--GCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 97813 0.67 0.86929
Target:  5'- cGCGCGUGGccGCGUcGggCGCGUGCcGCc -3'
miRNA:   3'- -CGUGCGCC--UGUA-CuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 73068 0.67 0.86929
Target:  5'- cGCGcCGCGGGCGcgGAagUCgACGCGC-GCa -3'
miRNA:   3'- -CGU-GCGCCUGUa-CU--AG-UGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 96629 0.67 0.86929
Target:  5'- uGCGCGgGGGCcgGcgggUACGCGUcgUGCg -3'
miRNA:   3'- -CGUGCgCCUGuaCua--GUGCGCG--ACGa -5'
6350 3' -55.5 NC_001847.1 + 14715 0.67 0.86929
Target:  5'- aCGCGCGGGCAgGAggcgaACGCGgucguCUGCa -3'
miRNA:   3'- cGUGCGCCUGUaCUag---UGCGC-----GACGa -5'
6350 3' -55.5 NC_001847.1 + 104432 0.67 0.876676
Target:  5'- cCGCGCGGGCGUccagGAgCGcCGgGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUA----CUaGU-GCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 122676 0.67 0.876676
Target:  5'- cCACGCGGGaagccgcgGAggcuccgccgCGCGCGCUGUg -3'
miRNA:   3'- cGUGCGCCUgua-----CUa---------GUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 68745 0.66 0.883838
Target:  5'- cGCGcCGCGGAUGUGcgCGCGUGaugacauaGCUa -3'
miRNA:   3'- -CGU-GCGCCUGUACuaGUGCGCga------CGA- -5'
6350 3' -55.5 NC_001847.1 + 35940 0.66 0.883838
Target:  5'- cGCGCGCuugcgccuGGGCGcUGcUgGCgGCGCUGCUg -3'
miRNA:   3'- -CGUGCG--------CCUGU-ACuAgUG-CGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 95952 0.66 0.883838
Target:  5'- cGCugGCGGGCGagcgUGAgcgCAgcagccgcugcCGCGgCUGCg -3'
miRNA:   3'- -CGugCGCCUGU----ACUa--GU-----------GCGC-GACGa -5'
6350 3' -55.5 NC_001847.1 + 38601 0.66 0.883838
Target:  5'- cGCGCGCGGcugcACAgccggCGCGCGCgGUc -3'
miRNA:   3'- -CGUGCGCC----UGUacua-GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 15005 0.66 0.883838
Target:  5'- aGCGCGCcggaGGACAaGGUCGCG-GCaaugGCUu -3'
miRNA:   3'- -CGUGCG----CCUGUaCUAGUGCgCGa---CGA- -5'
6350 3' -55.5 NC_001847.1 + 78311 0.66 0.883838
Target:  5'- -gGCGCGGcGCG-GcgCGCGCGCcGCg -3'
miRNA:   3'- cgUGCGCC-UGUaCuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 87064 0.66 0.882423
Target:  5'- gGCA-GCGGACGUGuacuucuacgaCACGCGCccGCa -3'
miRNA:   3'- -CGUgCGCCUGUACua---------GUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 48625 0.66 0.880285
Target:  5'- aGCACGCGGGCGcccagccgcCGCGCgacggugcagcgccGCUGCa -3'
miRNA:   3'- -CGUGCGCCUGUacua-----GUGCG--------------CGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.