miRNA display CGI


Results 1 - 20 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 46442 0.66 0.615903
Target:  5'- cGGGcGCGGCgguggGGaugcgcgcgcggaugGCCUUGCGCaUGGCCa -3'
miRNA:   3'- -CCU-CGUCGa----CCg--------------CGGAGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 39179 0.66 0.614916
Target:  5'- cGGcAGCGGCUGcuGCGCucacgCUCGC-CC-GCCa -3'
miRNA:   3'- -CC-UCGUCGAC--CGCG-----GAGCGuGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 86124 0.66 0.614916
Target:  5'- cGAGCGGCUccgcgacgcGGCGCU----GCCGGCUu -3'
miRNA:   3'- cCUCGUCGA---------CCGCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 100675 0.66 0.614916
Target:  5'- gGGGGUccccAGgaGGCuuUCUCGCACCcaggcGGCCa -3'
miRNA:   3'- -CCUCG----UCgaCCGc-GGAGCGUGG-----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 38559 0.66 0.614916
Target:  5'- uGGAuGUcucGCcgGGCGCCcagGCACaCGGCCa -3'
miRNA:   3'- -CCU-CGu--CGa-CCGCGGag-CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 49936 0.66 0.614916
Target:  5'- --cGCAcGUUGGaCGCCguggCGCGCgGuGCCg -3'
miRNA:   3'- ccuCGU-CGACC-GCGGa---GCGUGgC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 83267 0.66 0.614916
Target:  5'- cGGcGGgGGCgGGCGCagaggCGCACaccugCGGCCu -3'
miRNA:   3'- -CC-UCgUCGaCCGCGga---GCGUG-----GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 107642 0.66 0.614916
Target:  5'- gGGGGCGGgUGG-GUCg---GCCGGCCg -3'
miRNA:   3'- -CCUCGUCgACCgCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 12910 0.66 0.614916
Target:  5'- -cGGCGGCauguacgugGGCGCCccugaggGCACCcGGCCc -3'
miRNA:   3'- ccUCGUCGa--------CCGCGGag-----CGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 4829 0.66 0.614916
Target:  5'- gGGGGCGGgUGG-GUCg---GCCGGCCg -3'
miRNA:   3'- -CCUCGUCgACCgCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 33376 0.66 0.614916
Target:  5'- -cAGCAGUcuGCGCCUCcUGgCGGCCg -3'
miRNA:   3'- ccUCGUCGacCGCGGAGcGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 52266 0.66 0.614916
Target:  5'- -uGGCuGCgGcGCGCC-CGCACgGGCg -3'
miRNA:   3'- ccUCGuCGaC-CGCGGaGCGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 38217 0.66 0.614916
Target:  5'- cGGAgGCccgGGCcGcGCGCCUC-UACgCGGCCg -3'
miRNA:   3'- -CCU-CG---UCGaC-CGCGGAGcGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 128181 0.66 0.614916
Target:  5'- cGGGCGGaa-GCGCCgccgcgacccCGCGCCuGGCCc -3'
miRNA:   3'- cCUCGUCgacCGCGGa---------GCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 85669 0.66 0.614916
Target:  5'- -cGGCcguGCUGGCGCgCagGCGCUcGCCg -3'
miRNA:   3'- ccUCGu--CGACCGCG-GagCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 53728 0.66 0.614916
Target:  5'- cGGGGCGGaucGGCGCgCggcguagCGCGgauCCGGCg -3'
miRNA:   3'- -CCUCGUCga-CCGCG-Ga------GCGU---GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 29122 0.66 0.614916
Target:  5'- cGAGCGGCUGcGCGagCUggcggaccgcUGCGCCGucGCCu -3'
miRNA:   3'- cCUCGUCGAC-CGCg-GA----------GCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 96483 0.66 0.614916
Target:  5'- cGGGCGGCgGGCGUCgccacggcaaCGCGgCGGgCa -3'
miRNA:   3'- cCUCGUCGaCCGCGGa---------GCGUgGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 68440 0.66 0.614916
Target:  5'- -cAGCAGCaUGGCGCgggaGCGCCcGCUg -3'
miRNA:   3'- ccUCGUCG-ACCGCGgag-CGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 57155 0.66 0.614916
Target:  5'- ---aCAGCagGGCGCgCUCGCcGCCcGCCa -3'
miRNA:   3'- ccucGUCGa-CCGCG-GAGCG-UGGcCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.