Results 1 - 20 of 517 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6351 | 3' | -60.4 | NC_001847.1 | + | 131454 | 0.66 | 0.737417 |
Target: 5'- gCCUACcugugguGCgcgcaGGCUCGcGGCGGCcUGCUg -3' miRNA: 3'- -GGAUGu------UGa----CCGGGC-CCGCCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 49263 | 0.66 | 0.737417 |
Target: 5'- aCCU-CGACaaGCUCGcGCuGCUCGCCg -3' miRNA: 3'- -GGAuGUUGacCGGGCcCGcCGAGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 116745 | 0.66 | 0.737417 |
Target: 5'- --gACAGCcccgcgGGCCCGcaGGCGaGgaCGCCg -3' miRNA: 3'- ggaUGUUGa-----CCGGGC--CCGC-CgaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 124897 | 0.66 | 0.737417 |
Target: 5'- uCCgaaaAGCgGGCCC-GGCaGGCgCGCCg -3' miRNA: 3'- -GGaug-UUGaCCGGGcCCG-CCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 83353 | 0.66 | 0.737417 |
Target: 5'- gUCUGCGACcgGGacgcgCgGGGCGaGCUggCGCCg -3' miRNA: 3'- -GGAUGUUGa-CCg----GgCCCGC-CGA--GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 18947 | 0.66 | 0.737417 |
Target: 5'- gCCgccGCGGC--GUCCGGGCGGCgaCGaCCa -3' miRNA: 3'- -GGa--UGUUGacCGGGCCCGCCGa-GC-GG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 54427 | 0.66 | 0.737417 |
Target: 5'- gCCU-CGGC-GGCCCGGGCagagacgaggggGGCggggacgaGCCc -3' miRNA: 3'- -GGAuGUUGaCCGGGCCCG------------CCGag------CGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 60729 | 0.66 | 0.737417 |
Target: 5'- aCCUccACGACgGGCgCGGGC-GCggCGCg -3' miRNA: 3'- -GGA--UGUUGaCCGgGCCCGcCGa-GCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 38384 | 0.66 | 0.737417 |
Target: 5'- aCCgGC-ACUGGCaCCGGcuuCGGCggaGCCu -3' miRNA: 3'- -GGaUGuUGACCG-GGCCc--GCCGag-CGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 79370 | 0.66 | 0.737417 |
Target: 5'- -aUGCGaaGCUgugcGGCagCGcGCGGCUCGCCg -3' miRNA: 3'- ggAUGU--UGA----CCGg-GCcCGCCGAGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 52039 | 0.66 | 0.737417 |
Target: 5'- gCUACGcgagGCggaGGCCCgcccggagguguGGGCGGgcaccUUCGCCg -3' miRNA: 3'- gGAUGU----UGa--CCGGG------------CCCGCC-----GAGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 117326 | 0.66 | 0.737417 |
Target: 5'- aCCUaGCGGCgGG---GGGCGGCcUCGCCc -3' miRNA: 3'- -GGA-UGUUGaCCgggCCCGCCG-AGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 22084 | 0.66 | 0.737417 |
Target: 5'- uCCgaaaAGCgGGCCC-GGCaGGCgCGCCg -3' miRNA: 3'- -GGaug-UUGaCCGGGcCCG-CCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 34495 | 0.66 | 0.737417 |
Target: 5'- gCCgcaGCAGCgcGGCCCuGGCgccgcagccaGGCggUCGCCa -3' miRNA: 3'- -GGa--UGUUGa-CCGGGcCCG----------CCG--AGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 115883 | 0.66 | 0.737417 |
Target: 5'- gCUGCGccGCcGGCUCGcgccgcuuGGcCGGCUCGCg -3' miRNA: 3'- gGAUGU--UGaCCGGGC--------CC-GCCGAGCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 56356 | 0.66 | 0.737417 |
Target: 5'- -aUGCuccGCgGGCgCGGGCGGCaCGaCCu -3' miRNA: 3'- ggAUGu--UGaCCGgGCCCGCCGaGC-GG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 97937 | 0.66 | 0.727898 |
Target: 5'- gCCgccaAGC-GGCaCCGGGCGcCUCGCa -3' miRNA: 3'- -GGaug-UUGaCCG-GGCCCGCcGAGCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 88294 | 0.66 | 0.727898 |
Target: 5'- -----uGCUGGgCCGacGCGGCUCGCg -3' miRNA: 3'- ggauguUGACCgGGCc-CGCCGAGCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 86378 | 0.66 | 0.727898 |
Target: 5'- --gGCGGC-GGgCCGcGGCGGCgggCGCg -3' miRNA: 3'- ggaUGUUGaCCgGGC-CCGCCGa--GCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 78298 | 0.66 | 0.727898 |
Target: 5'- gCCgggcGCAGacGGCgCGGcGCGGCgcgcgCGCCg -3' miRNA: 3'- -GGa---UGUUgaCCGgGCC-CGCCGa----GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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