miRNA display CGI


Results 1 - 20 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 56356 0.66 0.737417
Target:  5'- -aUGCuccGCgGGCgCGGGCGGCaCGaCCu -3'
miRNA:   3'- ggAUGu--UGaCCGgGCCCGCCGaGC-GG- -5'
6351 3' -60.4 NC_001847.1 + 52039 0.66 0.737417
Target:  5'- gCUACGcgagGCggaGGCCCgcccggagguguGGGCGGgcaccUUCGCCg -3'
miRNA:   3'- gGAUGU----UGa--CCGGG------------CCCGCC-----GAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 79370 0.66 0.737417
Target:  5'- -aUGCGaaGCUgugcGGCagCGcGCGGCUCGCCg -3'
miRNA:   3'- ggAUGU--UGA----CCGg-GCcCGCCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 49263 0.66 0.737417
Target:  5'- aCCU-CGACaaGCUCGcGCuGCUCGCCg -3'
miRNA:   3'- -GGAuGUUGacCGGGCcCGcCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 38384 0.66 0.737417
Target:  5'- aCCgGC-ACUGGCaCCGGcuuCGGCggaGCCu -3'
miRNA:   3'- -GGaUGuUGACCG-GGCCc--GCCGag-CGG- -5'
6351 3' -60.4 NC_001847.1 + 18947 0.66 0.737417
Target:  5'- gCCgccGCGGC--GUCCGGGCGGCgaCGaCCa -3'
miRNA:   3'- -GGa--UGUUGacCGGGCCCGCCGa-GC-GG- -5'
6351 3' -60.4 NC_001847.1 + 83353 0.66 0.737417
Target:  5'- gUCUGCGACcgGGacgcgCgGGGCGaGCUggCGCCg -3'
miRNA:   3'- -GGAUGUUGa-CCg----GgCCCGC-CGA--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 124897 0.66 0.737417
Target:  5'- uCCgaaaAGCgGGCCC-GGCaGGCgCGCCg -3'
miRNA:   3'- -GGaug-UUGaCCGGGcCCG-CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 60729 0.66 0.737417
Target:  5'- aCCUccACGACgGGCgCGGGC-GCggCGCg -3'
miRNA:   3'- -GGA--UGUUGaCCGgGCCCGcCGa-GCGg -5'
6351 3' -60.4 NC_001847.1 + 54427 0.66 0.737417
Target:  5'- gCCU-CGGC-GGCCCGGGCagagacgaggggGGCggggacgaGCCc -3'
miRNA:   3'- -GGAuGUUGaCCGGGCCCG------------CCGag------CGG- -5'
6351 3' -60.4 NC_001847.1 + 131454 0.66 0.737417
Target:  5'- gCCUACcugugguGCgcgcaGGCUCGcGGCGGCcUGCUg -3'
miRNA:   3'- -GGAUGu------UGa----CCGGGC-CCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 115883 0.66 0.737417
Target:  5'- gCUGCGccGCcGGCUCGcgccgcuuGGcCGGCUCGCg -3'
miRNA:   3'- gGAUGU--UGaCCGGGC--------CC-GCCGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 34495 0.66 0.737417
Target:  5'- gCCgcaGCAGCgcGGCCCuGGCgccgcagccaGGCggUCGCCa -3'
miRNA:   3'- -GGa--UGUUGa-CCGGGcCCG----------CCG--AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 22084 0.66 0.737417
Target:  5'- uCCgaaaAGCgGGCCC-GGCaGGCgCGCCg -3'
miRNA:   3'- -GGaug-UUGaCCGGGcCCG-CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 117326 0.66 0.737417
Target:  5'- aCCUaGCGGCgGG---GGGCGGCcUCGCCc -3'
miRNA:   3'- -GGA-UGUUGaCCgggCCCGCCG-AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 116745 0.66 0.737417
Target:  5'- --gACAGCcccgcgGGCCCGcaGGCGaGgaCGCCg -3'
miRNA:   3'- ggaUGUUGa-----CCGGGC--CCGC-CgaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 46802 0.66 0.727898
Target:  5'- gCUACGGCagacgagcacaGGCCCGcGCGGCUaaaGCg -3'
miRNA:   3'- gGAUGUUGa----------CCGGGCcCGCCGAg--CGg -5'
6351 3' -60.4 NC_001847.1 + 78298 0.66 0.727898
Target:  5'- gCCgggcGCAGacGGCgCGGcGCGGCgcgcgCGCCg -3'
miRNA:   3'- -GGa---UGUUgaCCGgGCC-CGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 86378 0.66 0.727898
Target:  5'- --gGCGGC-GGgCCGcGGCGGCgggCGCg -3'
miRNA:   3'- ggaUGUUGaCCgGGC-CCGCCGa--GCGg -5'
6351 3' -60.4 NC_001847.1 + 88294 0.66 0.727898
Target:  5'- -----uGCUGGgCCGacGCGGCUCGCg -3'
miRNA:   3'- ggauguUGACCgGGCc-CGCCGAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.