miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 96250 0.66 0.815771
Target:  5'- --aGUcAGgGCCGGcGGCGGcaauGGCGGGg -3'
miRNA:   3'- cugCGuUUgCGGCC-CUGUCu---CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 103902 0.66 0.815771
Target:  5'- cACGcCGGGCGCCGcGGcCGcGGGCGGc -3'
miRNA:   3'- cUGC-GUUUGCGGC-CCuGUcUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 121360 0.66 0.815771
Target:  5'- uGCGCGGcGgGCgGGGugGGGaGCGGGc -3'
miRNA:   3'- cUGCGUU-UgCGgCCCugUCUcCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 20508 0.66 0.815771
Target:  5'- cGCGCGu-CGUCGcGGGCGGGGGCccacuGGa -3'
miRNA:   3'- cUGCGUuuGCGGC-CCUGUCUCCGc----CC- -5'
6352 3' -58.6 NC_001847.1 + 19263 0.66 0.815771
Target:  5'- cGGCGCGAGcCGgCGGcGCAGcgucugugcGGCGGGc -3'
miRNA:   3'- -CUGCGUUU-GCgGCCcUGUCu--------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 3005 0.66 0.815771
Target:  5'- uGCGCGgcagcAGCGCCGcccaAUAGGGGCGGu -3'
miRNA:   3'- cUGCGU-----UUGCGGCcc--UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 1089 0.66 0.815771
Target:  5'- cACGcCGGGCGCCGcGGcCGcGGGCGGc -3'
miRNA:   3'- cUGC-GUUUGCGGC-CCuGUcUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 72199 0.66 0.815771
Target:  5'- -gUGCcuACuCCGGGucGCGGAGGCaGGGc -3'
miRNA:   3'- cuGCGuuUGcGGCCC--UGUCUCCG-CCC- -5'
6352 3' -58.6 NC_001847.1 + 112121 0.66 0.815771
Target:  5'- cGGCGC-GugGCCGcGGCAGAGuCGGu -3'
miRNA:   3'- -CUGCGuUugCGGCcCUGUCUCcGCCc -5'
6352 3' -58.6 NC_001847.1 + 108744 0.66 0.814063
Target:  5'- cGACGCGAcggcguuccugccGCGCUGGGcgcCGGAcgcgccgGGCGGc -3'
miRNA:   3'- -CUGCGUU-------------UGCGGCCCu--GUCU-------CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 49711 0.66 0.810629
Target:  5'- gGGCGCGgcgcccgugcaagugGGCGCCGGc---GAGGCGGu -3'
miRNA:   3'- -CUGCGU---------------UUGCGGCCcuguCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 2188 0.66 0.80717
Target:  5'- -cCGCGAgccGCGCCGcGACcucGGGGCGGc -3'
miRNA:   3'- cuGCGUU---UGCGGCcCUGu--CUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 71530 0.66 0.80717
Target:  5'- --aGCGGGCGaaGGGguaGCAGAGGCacgcggccacGGGg -3'
miRNA:   3'- cugCGUUUGCggCCC---UGUCUCCG----------CCC- -5'
6352 3' -58.6 NC_001847.1 + 11820 0.66 0.80717
Target:  5'- aGACgGCAcagcGCGCgGGGGgGGGGGCGc- -3'
miRNA:   3'- -CUG-CGUu---UGCGgCCCUgUCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 105001 0.66 0.80717
Target:  5'- -cCGCGAgccGCGCCGcGACcucGGGGCGGc -3'
miRNA:   3'- cuGCGUU---UGCGGCcCUGu--CUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 3147 0.66 0.80717
Target:  5'- cGGCG---GCGCCGGcGGCGc-GGCGGGc -3'
miRNA:   3'- -CUGCguuUGCGGCC-CUGUcuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 105960 0.66 0.80717
Target:  5'- cGGCG---GCGCCGGcGGCGc-GGCGGGc -3'
miRNA:   3'- -CUGCguuUGCGGCC-CUGUcuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 71239 0.66 0.80717
Target:  5'- -gUGCcauGACGCCGGaACAGAuGGUGGc -3'
miRNA:   3'- cuGCGu--UUGCGGCCcUGUCU-CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 84153 0.66 0.80717
Target:  5'- uGACGC--GCGCCGGGGaccucguagcccUAGAcGCGGc -3'
miRNA:   3'- -CUGCGuuUGCGGCCCU------------GUCUcCGCCc -5'
6352 3' -58.6 NC_001847.1 + 7859 0.66 0.80717
Target:  5'- -cCGguGGCGCCu--GCAGAGGCGGc -3'
miRNA:   3'- cuGCguUUGCGGcccUGUCUCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.